Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151148g00002 ATGGCAACATTTAAGTTGCTATTAGCAACACTTTTAATTAGTGTGCCGTTTCTATTTTCTTCCGTTGCAAATGGCTACTCAATGAAAGACATAAAATCATGGTGTAGCCAAACACCTTTCCCTCAACCATGTGAGTACTATTTGAGCAACCATGCATACAACAAACCCATAAAGAACAAATCAGATTTCCTCAAAGTGTCACTACAATTAGCCTTAGAGAGAGCACAAAGTGGCCATGAACACACAATCACACTTGGCCCTAAGTGTAGAAATTCACATGAGAAAGCTGCTTGGAATGATTGCATTAAACTCTATCAATACACAATCAACAAGCTCAACAAAACCATGGATCCAAAGTCAAAGTGTGACCAAGTTGATGCACAAACTTGGCTCAGCACTGCCCTAACAAACCTTGAGACATGCAAACTTGGTTTCTATGACCTAGGAGTCCAAGATTACTTGCTACCATTGTTGTCCAACTACAATGTTTCTTGCTTGATAAGCAACACACTATCATTGAACAAGGTGGCTTTTCAACCACCAAGTTACAAAGATGGTTTCCCATCATGGGTCAAGCCCGGTGATAGGAAACTTTTGCAGTCGTCTACGGCGGCTTCTAAGGCTAATGTGGTGGTGGCCAAAGATGGGTCTGGCAAATACACCACCGTTAGCGCCGCCGTAAACGCTGCACCAAGTGGTAGCAGTAGGTATGTGATATATGTTAAGGCTGGTGTTTACAATGAACAAGTTCAAATCAAGGCATCGAATATCATGTTGGTCGGAGATGGTATCGGAAAAACCGTTATCACCGGTAGCAAAAGTGTTGGAGGGGGAAGCACAACCTTCAACTCTGCCACTGTTGCTGTTACTGGAGATGGATTCATTGCTCAAGATATCACATTCAGAAACACTGCTGGAGCAGCAAATCACCAAGCCGTGGCACTGCGTTCTGGATCAGATCTTTCAGTCTTCTACAGATGTGGATTTGAAGGTTTTCAAGACACATTATATGTTTACTCAGACAGACAATTCTACAGAGAATGTGATATTTATGGAACCGTTGACTTCATCTTCGGAAATGCCGCAGTGGTTTTGCAAAACTGTAACATATACGCAAGAAATGCTCCTCAAAACACAGTTACAGTAACTGCTCAAGGCAGAACCGACCCAAACCAAAACACTGGAATCATCATCCACAATTCAAAGATTACGGCTGCCTCAGGCTTATCTAGCTCAGTGAAATCATACCTTGGAAGGCCATGGAAGCAATACTCAAGAACCGTGGTGATGAAGACATTTCTTGATAGCTTGATTAACCCAGCAGGGTGGTATCCATGGAGTGGTAACTTTGCATTGAACACTTTGTATTATGCTGAGTATGCAAACACAGGTCCTGGTTCATCAACCTCAAATAGGGTTACATGGAAGGGTTACCATGTTCTTACTAGTGCTTCTCAAGCTACACCTTTCACTGTTGGAAACTTCATTGCTGGGAATTCATGGTTGCCAAGCACTGGGGTCCCTTTCACCTCTGGTCTCTAA 1542 0.4274 MATFKLLLATLLISVPFLFSSVANGYSMKDIKSWCSQTPFPQPCEYYLSNHAYNKPIKNKSDFLKVSLQLALERAQSGHEHTITLGPKCRNSHEKAAWNDCIKLYQYTINKLNKTMDPKSKCDQVDAQTWLSTALTNLETCKLGFYDLGVQDYLLPLLSNYNVSCLISNTLSLNKVAFQPPSYKDGFPSWVKPGDRKLLQSSTAASKANVVVAKDGSGKYTTVSAAVNAAPSGSSRYVIYVKAGVYNEQVQIKASNIMLVGDGIGKTVITGSKSVGGGSTTFNSATVAVTGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCGFEGFQDTLYVYSDRQFYRECDIYGTVDFIFGNAAVVLQNCNIYARNAPQNTVTVTAQGRTDPNQNTGIIIHNSKITAASGLSSSVKSYLGRPWKQYSRTVVMKTFLDSLINPAGWYPWSGNFALNTLYYAEYANTGPGSSTSNRVTWKGYHVLTSASQATPFTVGNFIAGNSWLPSTGVPFTSGL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151148g00002 513 NCBIfam pectinesterase inhibitor domain 4 176 IPR006501 GO:0004857
Stsc151148g00002 513 PANTHER PECTINESTERASE 15 503 - -
Stsc151148g00002 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 176 IPR035513 -
Stsc151148g00002 513 FunFam Pectinesterase 203 513 - -
Stsc151148g00002 513 Pfam Pectinesterase 209 499 IPR000070 GO:0030599|GO:0042545
Stsc151148g00002 513 CDD PMEI-like_3 33 175 - -
Stsc151148g00002 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 176 IPR035513 -
Stsc151148g00002 513 Pfam Plant invertase/pectin methylesterase inhibitor 30 173 IPR006501 GO:0004857
Stsc151148g00002 513 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Stsc151148g00002 513 SMART PMEI_2 26 173 IPR006501 GO:0004857
Stsc151148g00002 513 SUPERFAMILY Pectin lyase-like 203 512 IPR011050 -
Stsc151148g00002 513 Gene3D - 203 513 IPR012334 -
Stsc151148g00002 513 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151148g00002 Stsc-Chr151148 18271 22306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151148g00002 1 513 Carbohydrate Esterase AT2G45220 66.731 0.0 717