Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151148g00001 ATGTCACCATTTCATTCCCTTGTGATAATCTTGATTCCTTTCCTACTTTCCTCCATTGTTTCTTCTTATTCATATAATGACCTTAAACTTTGGTGTGGCCAAACACCTAATCCACAACCATGTGAGTATCTCTTGAGCAAAAACCCTAATCACTTGAACAAACCCATTAACCAAAAATCTGATTTTCTCAAGCTTTCTTTGCAACTTGTCCAAGAGAGAGCACTCATAGGGCATGAAAATACTCTTTCACTTGGGTCAAAGTGCCGCAACCAACTTGAAAGAGTTGCATGGAATGATTGTGTTGAACTCTATCAACAAACCATTAGGAAGCTCAACAAAACCTTAGACCCTAATACCAAGTGCTCCCAAGTTGATGCTCAAACATGGCTTAGCACTGCTCTCACCAATCTTGAGACATGCAAAGCTGGCTTCTATGAACTTGGTGTTCAAGATTATCTTCTTCCCCTCATGTCCAACAATGTTACCAAGTTGCTAAGCAACACTTTGGCTCTTAATAACAATGGTGAATCTCATCAAGAGCCAAGCTACAAAGATGGATTCCCAACATGGGTGAAGCCAGGTGATAGAAAATTGTTGCAAGCATCTTCTCTGGCTTCTAGGGCTAATGTAGTGGTGGCTAAAGATAGGTCTGGAAAATTCAGCACAGTGAGTGCTGCCATAAATGCTGCACCAAAGAATAGCAATGGAAGGTATGTGATATATGTGAAAGCCGGGATTTACAATGAGCAAGTTGAAATAAAGGCAAAGAATATCATGCTGGTTGGAGATGGTATTGGAAAAACCATAATCACAGGTAGCAAAAGTGTTGGAGGTGGCACTACAACCTTTCGTTCAGCCACAGTTGCTGTTGTTGGAGATGGATTTATTGCTCAAGATATCACATTTAGAAACACTGCTGGTGCAAATAACCACCAAGCTGTTGCGCTGCGTTCTGGATCAGACTTATCAGTGTTCTACAGATGCAGTTTTGAGGGTTATCAAGACACATTGTATGTTCATTCTCAAAGACAATTCTATAAGAATTGCAATATCTATGGAACCGTTGACTTTATCTTTGGCAACGCTGCTGTAGTGTTCCAAAACTGCAATATATTCGCAAGAAACCCTCCAAACAAAGTTAACACAATCACAGCACAAGGTAGAACCGATCCAAACCAAAACACTGGCATTTCCATTCACAATTCTAGGGTTACAGCAGCTTCAGATTTAAAACCGGTTCAAAGCTCAGTGAGAACATATCTTGGAAGACCATGGAAACAGTATTCAAGAACAGTGTTCATGAAGAGTTTTCTTGATAGTTTGATTCACCCAGCTGGGTGGATGGAATGGAGTGGTAACTTTGCTTTGAATACACTTTATTATGGAGAATATATGAACACTGGACCCGGTTCTTCCACTGCAAACCGGGTTAAATGGCGTGGTTATCGTGTTATCAAGAGTGCTTCTGAAGCATCAAGATTCACGGTTGGGAATTTCATTGGTGGAAACTCATGGTTACCAGCTACCAAAGTGCCTTTCACTTCTACTCTCTAA 1554 0.4067 MSPFHSLVIILIPFLLSSIVSSYSYNDLKLWCGQTPNPQPCEYLLSKNPNHLNKPINQKSDFLKLSLQLVQERALIGHENTLSLGSKCRNQLERVAWNDCVELYQQTIRKLNKTLDPNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYLLPLMSNNVTKLLSNTLALNNNGESHQEPSYKDGFPTWVKPGDRKLLQASSLASRANVVVAKDRSGKFSTVSAAINAAPKNSNGRYVIYVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGANNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYKNCNIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKPVQSSVRTYLGRPWKQYSRTVFMKSFLDSLIHPAGWMEWSGNFALNTLYYGEYMNTGPGSSTANRVKWRGYRVIKSASEASRFTVGNFIGGNSWLPATKVPFTSTL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151148g00001 517 SUPERFAMILY Pectin lyase-like 203 516 IPR011050 -
Stsc151148g00001 517 CDD PMEI-like_3 30 174 - -
Stsc151148g00001 517 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Stsc151148g00001 517 FunFam Pectinesterase 203 517 - -
Stsc151148g00001 517 Gene3D - 204 517 IPR012334 -
Stsc151148g00001 517 SMART complete 242 420 IPR006633 -
Stsc151148g00001 517 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Stsc151148g00001 517 PANTHER PECTINESTERASE 11 509 - -
Stsc151148g00001 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Stsc151148g00001 517 SMART PMEI_2 23 171 IPR006501 GO:0004857
Stsc151148g00001 517 Pfam Pectinesterase 209 503 IPR000070 GO:0030599|GO:0042545
Stsc151148g00001 517 NCBIfam pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Stsc151148g00001 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 174 IPR035513 -
Stsc151148g00001 517 FunFam Pectinesterase 23 174 - -
Stsc151148g00001 517 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151148g00001 Stsc-Chr151148 7000 9079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151148g00001 1 517 Carbohydrate Esterase AT2G45220 66.281 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151148g00001 K01051 - gmx:100783964 899.427