Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151146g00014 ATGATTGTAACACGCTCAGCTTTGATGCTCCATCTCCACAATCCCCAAACTCCCTTCCAATTCTTCAACCACCATGCTCCCGCCTTTCTTCTCCGCACCACCACCGCCACTTCTTCTTCTCTCTTCAAAGCTCGCTTCTTTTCTCTCACCCCTCCACGCCGAACCCCTGTAGCATCCTCATCATCGTCTACGCAAGGTTCAGAGAGTAGAGACACTTTCTTTGCTGAAGATAACGTTTCGTGGAGCTCACTTGGTCTCTCCGATACCCTTTCTCGTGCTCTCTCTAACATTGGCCTCAATAGACCCTCTCTCGTTCAGGCTTCTTCAATTCCATCTGTGCTTTCTGGAAAGGATGTGATTATTGCAGCAGAGACTGGCAGTGGTAAAACATACAGCTATCTAGTTCCTCTTTTTGATAAGCTAAGGGACATCCGTGAACATTCTCAACATGCTGTATCTGATCAAGAAGTTCCTCTTCCCCGAAAGAATGTTTTCCTCGTTCTTTGTCCAAATGTACAGCTTTGCGAGCAGGTAGTCAGGATGGCTAATAGTCTATGTGGAGACAATGGTGAACCAATTGTTAGTGTGGCAGCAGTTTGTGGCAGACAGGGATGGCCAATTCGTGAGCCTGATATAATTGTGACAACTCCTGCTGCCCTTCTGAATTATGTAGACACTGATAGAAGCCGTCGAATGGAATTTATGCGTGGTGTTAAATATGTGGTATTTGATGAGGCTGATATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTGATCCGCCTGCTAAACTTGCTTCGCTTTGATGAAAAGCTCTTGTCTCGTGCAAAAGAATCTGCAGGAGATTTACCAGAGAAACCAGAATCTTCCGTGTCAGCGGATGATGCTTTGGAAGATGAAGAGGAACTTCCTCCTGAGGCCATGTCCGAAGAGGATGATGATACTCAGGACGATATTGTTGATACTAATAAAGAAGCTAACTCTGTTAAACAAAGAGACTGGAGGAGAGTCAGGAAAACTTATAAGCGCAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCTGTGAATGGAAAGAAAACAGCTGGAGCAATGTTGAAACATATGTTTCCGGATGCTACATGGGTTAGCGGAAACTATCTTCATTGTCACAATCCAAGGTTGGAGCAAAGATGGGTTGAAGTTACGGTTGAGACACAGGTGGATCAACTCATAAAGGCTGTGCGTCATCCCTTCAAGCCGATTGATCTGGAGAATGCTGGTGGCATCCAGAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTACTCCGGTGTGGGATTGAGTGTTTACGCTATCATAAGAATTGCACATTGGAGGAGCGAGCGCAGGTCTTAGTTGAATTTGAAGAGAAAGGTGGTGTTCTTGTGTGTACCGATGCAGCTGCTCGTGGTGTGGATATTCCCAATGTCTTACATGTTATTCAGGCAGATTTTGCTACCTCTGCCGTAGACTTTCTACATAGGGTTGGTCGTACGGCTAGAGCTGGTCAATTTGGACTTGTTACTAGCATGTATACTGAATCCAACAAGGAGCTTGTTCGTGCAGTTCGTCGAGCTGGAGAACTTGCTCAACCTGTGGAGGCGGCATTTAGCAGGAAAAGAAGCTTTCGCAACAAACTCAAAAAGAGCGGTGCTAGCAAAGTCAGAGATTCAGAGACTATTAAAGAGAGTGTTGTAGCATGA 1743 0.4521 MIVTRSALMLHLHNPQTPFQFFNHHAPAFLLRTTTATSSSLFKARFFSLTPPRRTPVASSSSSTQGSESRDTFFAEDNVSWSSLGLSDTLSRALSNIGLNRPSLVQASSIPSVLSGKDVIIAAETGSGKTYSYLVPLFDKLRDIREHSQHAVSDQEVPLPRKNVFLVLCPNVQLCEQVVRMANSLCGDNGEPIVSVAAVCGRQGWPIREPDIIVTTPAALLNYVDTDRSRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLLNLLRFDEKLLSRAKESAGDLPEKPESSVSADDALEDEEELPPEAMSEEDDDTQDDIVDTNKEANSVKQRDWRRVRKTYKRSKQYIFVAATLPVNGKKTAGAMLKHMFPDATWVSGNYLHCHNPRLEQRWVEVTVETQVDQLIKAVRHPFKPIDLENAGGIQRTMVFANTVEAVEAVAKILLRCGIECLRYHKNCTLEERAQVLVEFEEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQFGLVTSMYTESNKELVRAVRRAGELAQPVEAAFSRKRSFRNKLKKSGASKVRDSETIKESVVA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151146g00014 580 CDD DEADc 90 272 - -
Stsc151146g00014 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 371 IPR014001 -
Stsc151146g00014 580 Gene3D - 388 580 IPR027417 -
Stsc151146g00014 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 528 IPR027417 -
Stsc151146g00014 580 CDD SF2_C_DEAD 387 525 - -
Stsc151146g00014 580 MobiDBLite consensus disorder prediction 559 580 - -
Stsc151146g00014 580 Pfam Helicase conserved C-terminal domain 423 516 IPR001650 -
Stsc151146g00014 580 SMART ultradead3 98 390 IPR014001 -
Stsc151146g00014 580 MobiDBLite consensus disorder prediction 276 292 - -
Stsc151146g00014 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Stsc151146g00014 580 Gene3D - 57 369 IPR027417 -
Stsc151146g00014 580 SMART helicmild6 436 516 IPR001650 -
Stsc151146g00014 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 564 IPR001650 -
Stsc151146g00014 580 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 80 552 - -
Stsc151146g00014 580 Pfam DEAD/DEAH box helicase 105 269 IPR011545 GO:0003676|GO:0005524
Stsc151146g00014 580 MobiDBLite consensus disorder prediction 293 318 - -
Stsc151146g00014 580 MobiDBLite consensus disorder prediction 276 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151146g00014 Stsc-Chr151146 78276 82647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151146g00014 330 542 Eukaryotic Initiation Factors Gene Family AT5G11200 27.459 1.29e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151146g00014 - - gmx:100789323 849.351