Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151145g00007 ATGCATATGAGAGGTTTGTTTCCAGCGTTTGGGCAGTTGCATAATAGCCCTCCTCCTCCTCCTACTCATCAGCCACCTCTTCGCCCCACTCTTCCTTCTCCTCCTCTCCACCACCACCAGCCATTTCAGAGGCAGCAAACACCAAATCCAGTGTCTGTTACTGCTCTGCCACAACAACCTCCGGGAATTCGTCCGCGAGTGCGAGCAAGAAGAGGCCAAGCCACTGATCCTCACAGTATTGCTGAGAGGTTACGTCGTGAGAGAATAGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCAGCCATGCTTGATGAAATTGTGGATTATGTGAAGTTTCTAAGGCTCCAAGTTAAGGTTTTGAGCATGAGTAGGCTAGGTGGTGCTGGAGCTGTTGCCCAGCTAGTAGCTGATGTTCCTCTATCCGGAGTCGAGCAGGGTGAGGAAGTAGAAGGAGCAGGGAAGAGTGAAGAAGCTTGGGAGAAATGGTCAAATGATGGAACAGAGCAACAAGTTGCAAAGCTGATGGAAGAAGATGTTGGAGCAGCCATGCAATTCCTTCAGTCCAAGGCACTTTGCATTATGCCTATTTCTCTTGCCTCTGCCATCTTCCGTATGCCTCCCGCATCTGACCCATCCTCACTCATCAAGCCTGAATCAAACACCCATTCTTAG 699 0.495 MHMRGLFPAFGQLHNSPPPPPTHQPPLRPTLPSPPLHHHQPFQRQQTPNPVSVTALPQQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSGVEQGEEVEGAGKSEEAWEKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPPASDPSSLIKPESNTHS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151145g00007 232 Gene3D - 68 130 IPR036638 GO:0046983
Stsc151145g00007 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 132 IPR036638 GO:0046983
Stsc151145g00007 232 MobiDBLite consensus disorder prediction 1 79 - -
Stsc151145g00007 232 MobiDBLite consensus disorder prediction 39 53 - -
Stsc151145g00007 232 SMART finulus 79 128 IPR011598 GO:0046983
Stsc151145g00007 232 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 209 - -
Stsc151145g00007 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Stsc151145g00007 232 FunFam Basic helix-loop-helix transcription factor 68 130 - -
Stsc151145g00007 232 Pfam Helix-loop-helix DNA-binding domain 78 122 IPR011598 GO:0046983
Stsc151145g00007 232 MobiDBLite consensus disorder prediction 13 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151145g00007 Stsc-Chr151145 32453 39324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151145g00007 35 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.308 1.84e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151145g00007 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151145g00007 - - lang:109355094 310.071