Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151145g00006 ATGGCTGGTAATAGTAATAATAATAGTCATAGTAATGGGTCGGAGGGTTTGGGAGACGATTTCTTCGAGCAGATCTTGGCGGTGCCAACGGAGTATGGCGGCGGAGGTAGTAGAACATTAGTGGGGTCCATGCCACCAATGGTGCTTCAGTTGGGATCCACAGTAGGAAGCAGTGTTGGTGTTGGTGTGGATGGGTTAAGAATGGGGATGATGCCTTTGGGTTTAAACTTAGAGCAAACTGGTTTCCTTAGACGCTTTCCTGAACAAGTTTCTGATGTTGAAGCCGCCATTAACAACCAGCAACAACAACAACAATACCTTCGTCTTAGTAACAACAATAATAATAGTAGCTCTTCATCTTCCTCTTCTCCTGCTGGAATCACGGATCGAGATTCGATGCATATGAGAGGTTTGTTTCCAGCGTTTGGGCAGTTGCATAATAGCCCTCCTCCTCCTCCTACTCATCAGCCACCTCTTCGCCCCACTCTTCCTTCTCCTCCTCTCCACCACCACCAGCCATTTCAGAGGCAGCAAACACCAAATCCAGTGTCTGTTACTGCTCTGCCACAACAACCTCCGGGAATTCGTCCGCGAGTGCGAGCAAGAAGAGGCCAAGCCACTGATCCTCACAGTATTGCTGAGAGGTTACGTCGTGAGAGAATAGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCAGCCATGCTTGATGAAATTGTGGATTATGTGAAGTTTCTAAGGCTCCAAGTTAAGGTTTTGAGCATGAGTAGGCTAGGTGGTGCTGGAGCTGTTGCCCAGCTAGTAGCTGATGTTCCTCTATCCGGAGTCGAGCAGGGTGAGGAAGTAGAAGGAGCAGGGAAGAGTGAAGAAGCTTGGGAGAAATGGTCAAATGATGGAACAGAGCAACAAGTTGCAAAGCTGATGGAAGAAGATGTTGGAGCAGCCATGCAATTCCTTCAGTCCAAGGCACTTTGCATTATGCCTATTTCTCTTGCCTCTGCCATCTTCCGTATGCCTCCCGCATCTGACCCATCCTCACTCATCAAGCCTGAATCAAACACCCATTCTTAG 1095 0.4804 MAGNSNNNSHSNGSEGLGDDFFEQILAVPTEYGGGGSRTLVGSMPPMVLQLGSTVGSSVGVGVDGLRMGMMPLGLNLEQTGFLRRFPEQVSDVEAAINNQQQQQQYLRLSNNNNNSSSSSSSSPAGITDRDSMHMRGLFPAFGQLHNSPPPPPTHQPPLRPTLPSPPLHHHQPFQRQQTPNPVSVTALPQQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSGVEQGEEVEGAGKSEEAWEKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPPASDPSSLIKPESNTHS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151145g00006 364 SMART finulus 211 260 IPR011598 GO:0046983
Stsc151145g00006 364 MobiDBLite consensus disorder prediction 110 128 - -
Stsc151145g00006 364 MobiDBLite consensus disorder prediction 145 168 - -
Stsc151145g00006 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 264 IPR036638 GO:0046983
Stsc151145g00006 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
Stsc151145g00006 364 MobiDBLite consensus disorder prediction 171 185 - -
Stsc151145g00006 364 Pfam Helix-loop-helix DNA-binding domain 210 254 IPR011598 GO:0046983
Stsc151145g00006 364 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 78 341 - -
Stsc151145g00006 364 FunFam Basic helix-loop-helix transcription factor 200 262 - -
Stsc151145g00006 364 Gene3D - 200 262 IPR036638 GO:0046983
Stsc151145g00006 364 MobiDBLite consensus disorder prediction 110 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151145g00006 Stsc-Chr151145 32453 40382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151145g00006 167 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.308 2.70e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151145g00006 HLH 3.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151145g00006 - - lang:109355094 365.925