Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151143g00014 ATGGCTGACACAGCTGCTGAAGTTCCCACAAGGAGGTCAAGGAGCAAAAGGGCTCTCAAGGACAAAAACTCGTCAACAAATGACTCCGCAACCACCATCACCACCAAGGTCTCTGAATTCACCCCTCCCATTTCTGAACAAGTGATGGTGAAGGAGAACCTCGACACCACCACCACCACCACCCTTTCTCAACCCAAGAAAGGAAGAGCTGCTTCAAAGAAACAAAGCACCAAGCAGCAGGAGCAGCAATCTTCTTCTTTTGAGAAAGAGCTGCTTGAAATGCAGGAGAAGCTGCAGCGGCTGCACCTCGAGAAGGAGAAAACCGAGGAGCTCTTGAAGGCCAAGGATGAGGCCCTCAAGCTCAAGGACCAAGAGCTTCAAACCCGAGGCAAGGAACAGGAGAAGCTCCAGACCGAGCTCAAGAAGCTCCAGAAGTTGAAGGAGTTCAAACCCACCATGAATTTGCCTCTGCTGAAAGATAATAAGGAACAACAAGACAAGAAGGACAAGAAGAAAAGGCCCTCTGCTCCTTACATTCTGTGGTGCAAAGATCAATGGAATGAGATCAAGAAAACAAACCCAGAGGCAGAATTCAAGGAGATCTCAAACATGTTGGGGGCTAAATGGAAGACAGTTAGCGCCGAAGAGAAGAAGCCGTACGAAGACAAGTACAATGCTGAAAAAGAAGCATACATGGAGGTTATGGCGAAGGAAAAGCGCGAGGCGGAGGCATTGAAGCTCTTAGAAGACGATCAGAAGCAGAAGATGGCCATGGAGCTGCTTGAACAGTACATGCAGTTTAGGCAAGAGACAGAGAAAGAGACGAAGAAGAAGAAGAAGAAGAAGAAAGAGAAGGATCCATTGAAGCCAAAGCACCCATTGTCAGCATACATCCTTTTCACAAACGATAGGCGTGCGGCTCTTGTTGCAGAGAACAAGAGCGTTGTGGAGGTTACCAAGATGACGGGGGAAGAGTGGAAGAACATGAGGGAGGAGGAGAAGAGGCCTTACGAGGAGATGGCGAAGAAGAAGAAGGAGCAGTATGTTAGAGAAATGGAGGCTTATAAGCAGAAGAGAGATGAGGAGGCTGCAAATCTGATGAAGGAAGAGGAGGAGCACATGAAGCTTCAGAAGCAGGAAGCGTTGCAGCTGCTGAAGAAGAAAGAGAAAACTGAAAACCTTATCAAGAAAACAAAGCAGCAGAAGAAGAAGAAGGAAGAGAAGAATTCTGATCCAAACAGGCCTAAGAGGCCTCCATCCTCATTCCTCTTGTTCAGCAAGGAAGCAAGGAAACTTTTACATGAGGAACGTCCTGGAATCAGCACTTCCACCCTTAATGCACTTATTTCATTGAAGTGGAAGGAACTGAGTGAGGAAGAGAGACAAATGTGGAATGGGAAAGCAAGTGAAGCAATGGAGGTGTACAAGAAGGAATTGGAGGAATACAACAGAACCATTGCTGCTGCAACTCAAGAATGA 1479 0.4706 MADTAAEVPTRRSRSKRALKDKNSSTNDSATTITTKVSEFTPPISEQVMVKENLDTTTTTTLSQPKKGRAASKKQSTKQQEQQSSSFEKELLEMQEKLQRLHLEKEKTEELLKAKDEALKLKDQELQTRGKEQEKLQTELKKLQKLKEFKPTMNLPLLKDNKEQQDKKDKKKRPSAPYILWCKDQWNEIKKTNPEAEFKEISNMLGAKWKTVSAEEKKPYEDKYNAEKEAYMEVMAKEKREAEALKLLEDDQKQKMAMELLEQYMQFRQETEKETKKKKKKKKEKDPLKPKHPLSAYILFTNDRRAALVAENKSVVEVTKMTGEEWKNMREEEKRPYEEMAKKKKEQYVREMEAYKQKRDEEAANLMKEEEEHMKLQKQEALQLLKKKEKTENLIKKTKQQKKKKEEKNSDPNRPKRPPSSFLLFSKEARKLLHEERPGISTSTLNALISLKWKELSEEERQMWNGKASEAMEVYKKELEEYNRTIAAATQE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151143g00014 492 MobiDBLite consensus disorder prediction 9 23 - -
Stsc151143g00014 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 171 239 IPR009071 -
Stsc151143g00014 492 MobiDBLite consensus disorder prediction 360 414 - -
Stsc151143g00014 492 Coils Coil 221 255 - -
Stsc151143g00014 492 CDD HMG-box_AtHMGB6-like_rpt1 173 239 - -
Stsc151143g00014 492 SUPERFAMILY HMG-box 167 236 IPR036910 -
Stsc151143g00014 492 Coils Coil 465 492 - -
Stsc151143g00014 492 SUPERFAMILY HMG-box 276 362 IPR036910 -
Stsc151143g00014 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 415 483 IPR009071 -
Stsc151143g00014 492 MobiDBLite consensus disorder prediction 360 423 - -
Stsc151143g00014 492 MobiDBLite consensus disorder prediction 160 174 - -
Stsc151143g00014 492 Pfam HMG (high mobility group) box 415 483 IPR009071 -
Stsc151143g00014 492 Pfam HMG (high mobility group) box 172 236 IPR009071 -
Stsc151143g00014 492 Pfam HMG (high mobility group) box 290 356 IPR009071 -
Stsc151143g00014 492 SMART hmgende2 414 484 IPR009071 -
Stsc151143g00014 492 SMART hmgende2 289 357 IPR009071 -
Stsc151143g00014 492 SMART hmgende2 170 240 IPR009071 -
Stsc151143g00014 492 Coils Coil 338 408 - -
Stsc151143g00014 492 Coils Coil 77 124 - -
Stsc151143g00014 492 MobiDBLite consensus disorder prediction 50 89 - -
Stsc151143g00014 492 MobiDBLite consensus disorder prediction 24 42 - -
Stsc151143g00014 492 SUPERFAMILY HMG-box 402 486 IPR036910 -
Stsc151143g00014 492 Gene3D High mobility group box domain 158 246 IPR036910 -
Stsc151143g00014 492 Gene3D High mobility group box domain 273 367 IPR036910 -
Stsc151143g00014 492 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 490 IPR044601 GO:0003677
Stsc151143g00014 492 Gene3D High mobility group box domain 394 487 IPR036910 -
Stsc151143g00014 492 MobiDBLite consensus disorder prediction 1 90 - -
Stsc151143g00014 492 MobiDBLite consensus disorder prediction 151 174 - -
Stsc151143g00014 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 290 356 IPR009071 -
Stsc151143g00014 492 MobiDBLite consensus disorder prediction 268 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151143g00014 Stsc-Chr151143 98865 100933 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc151143g00014 HMG_box 4.7e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151143g00014 K09273 - gmx:100783033 524.242