Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151143g00003 ATGGCTGCTATTACTACTGCTTTTTCTTCTTCTGCTTCTACTTGTATGAAACACACTACTCAGTACCTCAACAAAACCAAACTCCTCAAGGAACAACAACACCCTACCAACCATCCATATCCTAAACTCATACGCATACGTGTCGCCGACGCCGACGCCACAGATTCCTCCAGCGACGACGAACCACCTACCAATTCCTCCTTCACACGCCGCCGACTCAAGAGCTTCGTTAACGAGATCACCATTGCCTCCTCCACCCAACAACCCACCCCTACACTCGCTTCCACCAAGAGAAAGAACGGGCCCAAGTCTGCAGCTGCTATCCCAGCTCCGCCCAGCCGGCGCCGTCGTCAGTCAAAGGTCTTCTCCGGGAAGAAGTTCCGGGGAGTGAGGCAGAGACCATGGGGGAAGTGGGCTGCCGAGATAAGAGACCCTTCCCGCCGGGTTAGGTTGTGGCTGGGAACCTACGACACCGCCGAGGAAGCCGCCATGGTGTACGACAACGCCGCCATTCAGCTTCGCGGCTCCGACGCCCTGACGAACTTCATCACTCCACCGGCGCCGGAAGATAACAATTCCAGCGAAGAAGAATGCAGCAAGAATGAAGAGAATAACACGTTGTCTCCCACTTGTGTTCTTGTTGGGTGTTGCTCGGAAGAAACAGAGTGCGGAACTGCTACCAGTGAAGAACAGGAGTATCAGTCCTCTTATGAGTTGAAGAGCGAGTCAATGTTTCCGATTCCGAAGGATTCGGTGTTTGAGTTTGAAACAGAGGAGTTATTCAGCGATGATTTTTCAAGTGCGTTTCTGAGTTATTCGATTGATGAGACTCTCTTGGATTTCGGTTTCAAGAGCAGTAGTCCCAGCTGCTATGGTTGTTGGCAATCAGATTACGATGACACTTTCCAAGACATTTCAGATTTCTTTGTCTCCGATCCTCTTGTTGCTCTCTGA 954 0.5115 MAAITTAFSSSASTCMKHTTQYLNKTKLLKEQQHPTNHPYPKLIRIRVADADATDSSSDDEPPTNSSFTRRRLKSFVNEITIASSTQQPTPTLASTKRKNGPKSAAAIPAPPSRRRRQSKVFSGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIQLRGSDALTNFITPPAPEDNNSSEEECSKNEENNTLSPTCVLVGCCSEETECGTATSEEQEYQSSYELKSESMFPIPKDSVFEFETEELFSDDFSSAFLSYSIDETLLDFGFKSSSPSCYGCWQSDYDDTFQDISDFFVSDPLVAL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151143g00003 317 CDD AP2 125 182 IPR001471 GO:0003700|GO:0006355
Stsc151143g00003 317 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Stsc151143g00003 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 41 217 - -
Stsc151143g00003 317 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Stsc151143g00003 317 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Stsc151143g00003 317 FunFam Ethylene-responsive transcription factor 2 125 184 - -
Stsc151143g00003 317 MobiDBLite consensus disorder prediction 51 122 - -
Stsc151143g00003 317 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Stsc151143g00003 317 SUPERFAMILY DNA-binding domain 126 182 IPR016177 GO:0003677
Stsc151143g00003 317 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Stsc151143g00003 317 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Stsc151143g00003 317 MobiDBLite consensus disorder prediction 58 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151143g00003 Stsc-Chr151143 40184 41248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151143g00003 16 317 AP2-EREBP Transcription Factor Family AT4G23750 38.551 1.01e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151143g00003 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151143g00003 - - ahf:112732493 426.787