Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151142g00002 ATGGAACTTGGATTAAGTTTAGGAGACTCTTCAAGGCCTTTTGTTGGGTTCATGGAAAAGCCTCGTAGTAGTGAACCTACATCTTCCAACCAACTTGGATTAGGCTTCACCACCGCCTCCACCACCTTGTCCATTGGACCAATCATCACTACAAGACAAAGAAATCAACAAGAAAATGAAGAAAAAGTAGAAGCAAAACCAAAGGACATCATAAACAACAGCAACAACAACCCTCCTCTTCATCAGCTTGATCTACTTCCTCAACTCTCTCTCCCATGGCATCCTTCTCAAAACGGTAGAGTCTCAGGAGGTTTTGGGGTTTCTTCAAAAGGTTTGGACGTAAACGTGCTGCCGCTGACAACTGTGGCGGCGGTGGCAGAGGATGAGGCGGAGGAAGGGGCGGCGCTGTCATCATCCCCGAACAGCGCAGCATCTTCCTTTCAGACGGATCTATGCATATTTGGTGGCGGAAGCGGTGGCGGTGGTAGTTACAGTGGTGGTTCAGGTGGAAAAAGAGATCACTCTGATGGCGAAGCTTATGATCGTGATCATCGTGAGCAGAGGGATTCTTCAAGAGCAAGTGACGAAGATGAAAATTGCGGCCGCGGCACAAGGAAGAAGCTCAGGCTATCCAAGGAACAATCAGCTTTCCTTGAAGAGAGCTTCAAAGAGCACAATACTCTTAACCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGGCCTCGCCAAGTTGAAGTCTGGTTTCAAAATAGAAGAGCAAGGACAAAGTTGAAGCAAACTGAGGTGGACTGTGAGTACTTGAAGAGGTGCTGTGAAACACTAACAGAAGAGAACAGAAGGCTTCATAAGGAGCTTCAAGAATTGAGGGCTCTAAAGACTTCAAACCCATTCTACATGCAGTTACCAGCAACAACCTTGACCATGTGCCCTTCTTGTGAACGTGTTGCTACAAATCCTTCAAACAATTCTGCTTCACCAACTTCTAATAATAATAATTCTAACAATAATAGTTGTGACTCAAATTCCAAGGCCATTGGATTCCCTCTTGGGAAACACAGGTTTCATCCTTTTAATCACACAACACAACATCCACATCAGTCCACAGCATCGTGA 1122 0.4528 MELGLSLGDSSRPFVGFMEKPRSSEPTSSNQLGLGFTTASTTLSIGPIITTRQRNQQENEEKVEAKPKDIINNSNNNPPLHQLDLLPQLSLPWHPSQNGRVSGGFGVSSKGLDVNVLPLTTVAAVAEDEAEEGAALSSSPNSAASSFQTDLCIFGGGSGGGGSYSGGSGGKRDHSDGEAYDRDHREQRDSSRASDEDENCGRGTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNPSNNSASPTSNNNNSNNNSCDSNSKAIGFPLGKHRFHPFNHTTQHPHQSTAS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151142g00002 373 SMART HOX_1 203 265 IPR001356 GO:0003677
Stsc151142g00002 373 ProSitePatterns 'Homeobox' domain signature. 236 259 IPR017970 GO:0000981|GO:0006355
Stsc151142g00002 373 MobiDBLite consensus disorder prediction 51 81 - -
Stsc151142g00002 373 SUPERFAMILY Homeodomain-like 192 262 IPR009057 -
Stsc151142g00002 373 Pfam Homeodomain 205 259 IPR001356 GO:0003677
Stsc151142g00002 373 FunFam Homeobox-leucine zipper protein 18 189 266 - -
Stsc151142g00002 373 MobiDBLite consensus disorder prediction 162 206 - -
Stsc151142g00002 373 MobiDBLite consensus disorder prediction 1 34 - -
Stsc151142g00002 373 MobiDBLite consensus disorder prediction 171 206 - -
Stsc151142g00002 373 MobiDBLite consensus disorder prediction 320 346 - -
Stsc151142g00002 373 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 59 336 - -
Stsc151142g00002 373 SMART halz 261 304 IPR003106 GO:0006355|GO:0043565
Stsc151142g00002 373 MobiDBLite consensus disorder prediction 320 373 - -
Stsc151142g00002 373 Gene3D - 209 259 - -
Stsc151142g00002 373 CDD homeodomain 205 262 IPR001356 GO:0003677
Stsc151142g00002 373 ProSiteProfiles 'Homeobox' domain profile. 201 261 IPR001356 GO:0003677
Stsc151142g00002 373 Coils Coil 274 297 - -
Stsc151142g00002 373 Pfam Homeobox associated leucine zipper 261 295 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151142g00002 Stsc-Chr151142 25683 28973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151142g00002 74 325 Homeobox Transcription Factor Family AT5G47370 54.198 1.09e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc151142g00002 Homeodomain 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151142g00002 K09338 - gmx:100778742 427.943