Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151141g00012 ATGGGAAATTGCATTTCAGAAACTTCTGATATCACTACGCAATATCCAAATAATCATATAGGTGCTACAAAAGGTGGTTATAGAGAAAGAAGCACATTATTATTGGTAGCACCACCACCAATACAACGCGATGATTTTGATTATTATGGTAAAGATGATGAGATTTTTCTACCAATTCCATCAAAATCTGAAGCAGACATACCAATCTTTTCATCCCCTGATTTAAAACCCTTCACATTCAATGACCTCAAGAATGTTACTGGAAACTTTAGTCCTGAGAATCTAATAGGAGAAGGTGGATTTGGTTATGTCTATAAGGGATGGATTAATGCTCATATCTCTGGAACTGGAACTGTTGCTGTAGCTGTAAAGAAGCTTAAATCTCAAGGCTTTCAAGGTCATAAAGAGTGGTTGAGTGAATTGAATCATTTGGGGCAACTTCATCATCAAAATCTAGTGAAACTTATTGGGTACTGCCTTGAAGGGGATAACAGGCTTCTGGTGTATGAGTACATGTCAAAAGGAAGCTTGGAAAATCACCTATTTTATAAGGGGGATGAAACGCTTTCTTGGGGAACAAGAATCAAAGTTGCTATTGGTGCTGCTAGAGGACTAACCTTTCTACATGAATCTGAGCATCAAGTCATCTACCGAGACTTCAAGCCTTCTAATATCTTATTAGATTCGGAATTTAATGCAAAACTTTCTGACTTTGGGTTGGCGAAAGCAGGGCCAATTGGTGATCTAAGTCATGTTTCTACTACTCAGGTCTTAGGTACCAGAGGTTATGCTGCTCCTGAATATATCCTTACAGGTCGGCTAACTACAAAATGCGATGTGTATAGTTTTGGAGTGGTGCTATTAGAACTACTAACAGGGAGGCATGCAATAGAGGTAACAAAATCAGGGGTGGAACATAATCTTGTGGAATGGGCAAAACCCTATTTGGGTGATAGGAGGAAGTTGTTCAGGATCATGGACACTAAGTTAGCAGGAAAATACTCAAAAAGAGCAGCTTATATAGTTGCTCTTCTTGCTTTGCAATGCATTAGTGATGCCAAGATCAGGCCTAAGATGCATGACATTTTGTCTACTTTAGAAAGGCTACAACTCACTAACAAAAACCACTCACATTCACATAGGTCCATCTCATCAAGCCCAACTTTACAAAGGCACGGTGCGGTGAAGCGTTACGGTGGCCATTGTTAA 1209 0.3945 MGNCISETSDITTQYPNNHIGATKGGYRERSTLLLVAPPPIQRDDFDYYGKDDEIFLPIPSKSEADIPIFSSPDLKPFTFNDLKNVTGNFSPENLIGEGGFGYVYKGWINAHISGTGTVAVAVKKLKSQGFQGHKEWLSELNHLGQLHHQNLVKLIGYCLEGDNRLLVYEYMSKGSLENHLFYKGDETLSWGTRIKVAIGAARGLTFLHESEHQVIYRDFKPSNILLDSEFNAKLSDFGLAKAGPIGDLSHVSTTQVLGTRGYAAPEYILTGRLTTKCDVYSFGVVLLELLTGRHAIEVTKSGVEHNLVEWAKPYLGDRRKLFRIMDTKLAGKYSKRAAYIVALLALQCISDAKIRPKMHDILSTLERLQLTNKNHSHSHRSISSSPTLQRHGAVKRYGGHC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151141g00012 402 Gene3D Phosphorylase Kinase; domain 1 57 171 - -
Stsc151141g00012 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Stsc151141g00012 402 FunFam Serine/threonine-protein kinase BIK1 60 171 - -
Stsc151141g00012 402 PANTHER OS01G0588500 PROTEIN-RELATED 68 370 - -
Stsc151141g00012 402 Gene3D Transferase(Phosphotransferase) domain 1 172 390 - -
Stsc151141g00012 402 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 172 381 - -
Stsc151141g00012 402 SUPERFAMILY Protein kinase-like (PK-like) 66 368 IPR011009 -
Stsc151141g00012 402 ProSiteProfiles Protein kinase domain profile. 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151141g00012 402 Pfam Protein kinase domain 93 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151141g00012 402 CDD STKc_IRAK 96 369 - -
Stsc151141g00012 402 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151141g00012 Stsc-Chr151141 85996 88659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151141g00012 78 366 Glycoside Hydrolase AT3G07070 53.242 1.89e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc151141g00012 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151141g00012 - - adu:107470619 612.068