Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151141g00008 ATGGGATCTGAGAATCAGGCTTCGATGGCTGATACTTCAAAAAACAGGTCTTCTGGTAAAACAAATCAGGAGAAAGTCCCTAAGAGAATCCACAAGGCCGAAAGAGAGAAAATGAAGCGTGAACATTTGAATGAGCTCTTTCTTGATCTTGCCAATGTACTTGATCTAAATGAGCAAAACAACGGAAAGGCTTCTATATTGAACGAAACTGCTAGGCTGCTAAAGGACTTGCTCAGTCAGATTGAGTCCCTCAAGAAGGAGAACTCGTCTCTGTTGTCTGAATCTCGATATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGACTTCCAGTCTAGAAACTCAAATCGAGAAACTTCAAGTCGAGATACAAGCGAGAGTAACCCAGTCTAAACCTGACCTGAATGCACCTCCCCAAGCTGAAATTGTGCTGCCGGAGCAGGGAAATTTTACAGGGCAGAGTCTCGAATTCCCTCCCATGGAACCCAACTTGCAGCAGGGACCTGCAGTTTTTGTTGTCCCCTATCGTCCCGATTTTCAATCTGCTTTCTCAGCTCCCAACATGACCGAGGTCACTCCAACACCTTCGTCTGGCGTTAGTAAACCGCATGCTCGGTATCCAACCCCAGCAGATTCATGGCCTTCATTGCTGCTTGGACAGCAACCAACCTCTAGTTGA 678 0.4631 MGSENQASMADTSKNRSSGKTNQEKVPKRIHKAEREKMKREHLNELFLDLANVLDLNEQNNGKASILNETARLLKDLLSQIESLKKENSSLLSESRYVTMEKNELKEETSSLETQIEKLQVEIQARVTQSKPDLNAPPQAEIVLPEQGNFTGQSLEFPPMEPNLQQGPAVFVVPYRPDFQSAFSAPNMTEVTPTPSSGVSKPHARYPTPADSWPSLLLGQQPTSS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151141g00008 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 77 IPR011598 GO:0046983
Stsc151141g00008 225 PANTHER TRANSCRIPTION FACTOR BHLH47 4 224 - -
Stsc151141g00008 225 MobiDBLite consensus disorder prediction 1 37 - -
Stsc151141g00008 225 MobiDBLite consensus disorder prediction 184 225 - -
Stsc151141g00008 225 MobiDBLite consensus disorder prediction 1 20 - -
Stsc151141g00008 225 MobiDBLite consensus disorder prediction 21 37 - -
Stsc151141g00008 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 105 IPR036638 GO:0046983
Stsc151141g00008 225 Coils Coil 102 122 - -
Stsc151141g00008 225 Gene3D - 24 102 IPR036638 GO:0046983
Stsc151141g00008 225 MobiDBLite consensus disorder prediction 184 201 - -
Stsc151141g00008 225 Coils Coil 67 94 - -
Stsc151141g00008 225 CDD bHLH_AtILR3_like 32 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151141g00008 Stsc-Chr151141 54060 56363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151141g00008 1 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 48.954 1.18e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151141g00008 - - psat:127073805 318.931