Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151141g00007 ATGGAGGGAGGTGATGATTTCCACCACCATCACCATCACCACCACCAGCAACAACACCATCACCACCACCACCGACAGAACTTCCCATTCCAACTTCTAGAGAAGAAAGAAGATCAAGAAGCAGCATCATGCTCAACCTCCTCCCCATACCCTTCCTTAGCAATCTCATCAGCCACAGAACCATCCACATCAAATTCAAACCGATCCAATGATCCAAACACCAACAATAACAACAACAACAACAACCAATTAGCCTTACAACAAGAACAGCAAATACAGCCTTCCGAACCTTCCGGAAAGAAGCCTCCTCCTAAGCGGACATCCACAAAGGACCGCCATACGAAAGTGGACGGCCGCGGCCGTCGCATCCGAATGCCGGCTCTCTGCGCAGCTAGGGTGTTCCAGCTGACCAGAGAGCTCGGCCACAAGTCCGATGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCAGCCGTGATCGCCGCCACCGGAACCGGAACAATCCCCGCAAACTTCACGTCCCTGAATATCTCCCTCCGAAGCAGCGGTTCCTCCATGTCCGTACCATCCCAGCTCCGATCCTCTTACTTCAACCCTAACTTCTCCCTCCAAAACCGGCGAACCTTGTTCCCCGGAATAACCCTCTCCTCCGACGCCACCACCGCCAGTAACAACAACACCACGCTCCTCAACTTCCAACAGCAACAGCAAACCCTAACCGCGAATATCTTCAAGCAAGAGCTCAGAGAGAGCCACGGCGCACCGTCTTCTTCTTCGACGTTGGATTTATCGGAAACAAGCGCGGAAGAAGGCTCGTTAGGGAGGAAGAGAAGGCCGCCATCGGAACACGAGCTATCTTCATCAGCACAGCACCAAATGGGAAGCTACCTTCTGCAATCGAGCGCAGGAGCGATTCCGGCGAGCCACGCAGCTCAGATTCCGGCGAACATATGGATGGTGGCGAATTCCCAAAATGCCCCTCAGGTAATGAGCGGTGACCCTATATGGACGTTTCCAACGCAGGTTAGTAACAGTGGGCTCTACCGTGGAACCGTTTCCAGTGGTTTGCACTTTATGAACTTCCCTACACCCATGGCTTTGCTGCCTACTCAGCAATTAGCCTCTTCCGGTGGCGGCGGTGGCGGTGGCAGTGTCAACGAAGGTCATTTGAATATGATCGCTGGGCTGGGCAGTTACCGGCCTGTGATCGGAGTTTCAGAGTCTTCTCAGGCGAGTGGGTCCCATCAACATCATCATCATCGAGATGGAAGCGATGATCGACATGACAGTACCAGCCACCACTCCTGA 1311 0.54 MEGGDDFHHHHHHHHQQQHHHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISSATEPSTSNSNRSNDPNTNNNNNNNNQLALQQEQQIQPSEPSGKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQNRRTLFPGITLSSDATTASNNNTTLLNFQQQQQTLTANIFKQELRESHGAPSSSSTLDLSETSAEEGSLGRKRRPPSEHELSSSAQHQMGSYLLQSSAGAIPASHAAQIPANIWMVANSQNAPQVMSGDPIWTFPTQVSNSGLYRGTVSSGLHFMNFPTPMALLPTQQLASSGGGGGGGSVNEGHLNMIAGLGSYRPVIGVSESSQASGSHQHHHHRDGSDDRHDSTSHHS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151141g00007 436 MobiDBLite consensus disorder prediction 250 291 - -
Stsc151141g00007 436 MobiDBLite consensus disorder prediction 42 96 - -
Stsc151141g00007 436 MobiDBLite consensus disorder prediction 1 123 - -
Stsc151141g00007 436 Pfam TCP family transcription factor 107 279 IPR017887 -
Stsc151141g00007 436 ProSiteProfiles TCP domain profile. 109 163 IPR017887 -
Stsc151141g00007 436 MobiDBLite consensus disorder prediction 10 26 - -
Stsc151141g00007 436 MobiDBLite consensus disorder prediction 270 285 - -
Stsc151141g00007 436 MobiDBLite consensus disorder prediction 414 436 - -
Stsc151141g00007 436 MobiDBLite consensus disorder prediction 27 41 - -
Stsc151141g00007 436 MobiDBLite consensus disorder prediction 408 436 - -
Stsc151141g00007 436 MobiDBLite consensus disorder prediction 103 122 - -
Stsc151141g00007 436 MobiDBLite consensus disorder prediction 250 268 - -
Stsc151141g00007 436 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 62 420 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151141g00007 Stsc-Chr151141 37280 39152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151141g00007 88 373 TCP Transcription Factor Family AT3G47620 47.592 2.57e-61 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc151141g00007 TCP 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151141g00007 - - vvo:131635423 439.113