Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151138g00015 ATGTTTAGACTCAATATATTTTCGAGTTGGTTGATATTTCTCAGTGTATTGAGACACACTCATCCAATCACAGATCCTGACGTTGAAGGGGAAGCACTGATTGAATTTCTGAGAGCCCTCAATGATTCCAATAATCAAATTAAAGATTGGAATAGTTTTTTTGTTAGCCCATGCTATAGTTGGTCTAATGTCACTTGTAGCAACAAACATGTTATATCTCTGAACTTGGCATCAAAAGGATTTTCTGGAACACTTTCTCCCTCAATTGCCAAATTGAAATACTTGGTTAGCTTGGAGTTGCAGGACAACAATCTTGCAGGCCCTTTACCCGACTACATCGCCAACTTAACGCGCCTCGAATATCTGAATCTCGCTGACAATAATTTCAACGGTTCTGTACCGGCTACTTGGGGCCGACTTTCGAGTCTAAAGCATCTGTTGTTGAAAGGGAATGATTTATCTGGACATATTCCAGAAACAATTGCAAACCTTACTGGATTGGCAGAATTGGATCTTTCATCTAATGGTCTTACCGGAACTATCCCAATGCCACTGTTTTCAATTCCAATATTTAATTTTTCGAACACACTTCTTCGTTGCGGCTCTAGCTTGGATCAGCCTTGTGCTTCTAAATCTTCACTTGCTGGTTCAACCAACAAATCAAAACTTGCAAGGGTTGTTGGTTTTGCAAGTTGTAGTTTATTTGCACTCATAAGTCTTGGGGTTATCTTTGTATATAGATACCATCGCATGCACAAACAGAAAACTGATGTCTTTTATGATGTTTCAGGTGAAGATGAGAGCCAAATTTCCTTTTGGCAACTGAGAAGATTTTCGTTACGCGAACTCCAACACGCGACTACAAATTTCAGCAAAAGCAATGTAATTGGCCAAGGAGGCTTTGGAAAAGTTTATAAGGGAGTACTCTCAGATGGCACAAAAGTGGCCGTGAAACGCCTCGCGGATTATCAGGCTCCTGGTGGAGAAGCTGCATTCCAAAGAGAAGTTCAGCTCATAAGTGTTGCAGTTCATAAGAATCTGCTAAGATTAATTGGATACTGCACAACCTCAACTGAAAGAATCCTAGTGTACCCTTTCATGGAAAATAGAAGTGTAGCATATCAATTGAGAG 1132 0.4011 MFRLNIFSSWLIFLSVLRHTHPITDPDVEGEALIEFLRALNDSNNQIKDWNSFFVSPCYSWSNVTCSNKHVISLNLASKGFSGTLSPSIAKLKYLVSLELQDNNLAGPLPDYIANLTRLEYLNLADNNFNGSVPATWGRLSSLKHLLLKGNDLSGHIPETIANLTGLAELDLSSNGLTGTIPMPLFSIPIFNFSNTLLRCGSSLDQPCASKSSLAGSTNKSKLARVVGFASCSLFALISLGVIFVYRYHRMHKQKTDVFYDVSGEDESQISFWQLRRFSLRELQHATTNFSKSNVIGQGGFGKVYKGVLSDGTKVAVKRLADYQAPGGEAAFQREVQLISVAVHKNLLRLIGYCTTSTERILVYPFMENRSVAYQLR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151138g00015 377 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Stsc151138g00015 377 SUPERFAMILY L domain-like 30 198 - -
Stsc151138g00015 377 SUPERFAMILY Protein kinase-like (PK-like) 268 374 IPR011009 -
Stsc151138g00015 377 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Stsc151138g00015 377 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 376 - -
Stsc151138g00015 377 Pfam Protein kinase domain 291 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151138g00015 377 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 27 185 - -
Stsc151138g00015 377 Gene3D Ribonuclease Inhibitor 28 135 IPR032675 -
Stsc151138g00015 377 Gene3D Ribonuclease Inhibitor 136 190 IPR032675 -
Stsc151138g00015 377 ProSiteProfiles Protein kinase domain profile. 290 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151138g00015 377 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Stsc151138g00015 377 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Stsc151138g00015 377 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151138g00015 Stsc-Chr151138 112038 114549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151138g00015 26 377 Receptor kinase-like Gene Family AT5G65240 50.986 7.44e-106 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc151138g00015 Pkinase 9.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151138g00015 - - qsa:O6P43_023430 513.072