Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc151138g00012 | ATGGCATTGTGTAACAAGCTTGGAAATTTATTGAGACAGAGTGCTCTCCGAAGTGGTTCATCCATGCTCAATTATATTCGCTGCATGTCCTCAAGCAGGCTTTTCATTGGGGGCCTTTCATATGGAGTTGATGACCAGAGTCTTAGGGATGCATTCTCCGGCTTTGGCGATGTGGTTGATGCAAGGGTTGTCACTGATAGAGACACCGGAAGATCAAGAGGTTTTGGATTTGTTAACTTCTCAAGCGAGGAGTCTGCTGGCTCAGCTCTCTCTTCAATGGACGGGAAGGATCTAAATGGCCGAGTGATTAGGGTGAGCTATGCAAATGATAGGCCTCCTCGAGGTGGTGGTGGTGGTTATGGTGTTGGTGGTGGTGGTTATGGTGGTGGTGGTGGTTACGGGGGAGGTGGTTACCGTAGAGGTGGAGGAGGAGGTGGTGGTTATGGTGATCCATCTTTTTAG | 462 | 0.4913 | MALCNKLGNLLRQSALRSGSSMLNYIRCMSSSRLFIGGLSYGVDDQSLRDAFSGFGDVVDARVVTDRDTGRSRGFGFVNFSSEESAGSALSSMDGKDLNGRVIRVSYANDRPPRGGGGGYGVGGGGYGGGGGYGGGGYRRGGGGGGGYGDPSF | 153 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc151138g00012 | 153 | Gene3D | - | 27 | 150 | IPR012677 | - | |
Stsc151138g00012 | 153 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 30 | 151 | - | - | |
Stsc151138g00012 | 153 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 34 | 104 | IPR000504 | GO:0003723 | |
Stsc151138g00012 | 153 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 142 | IPR035979 | GO:0003676 | |
Stsc151138g00012 | 153 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 32 | 110 | IPR000504 | GO:0003723 | |
Stsc151138g00012 | 153 | SMART | rrm1_1 | 33 | 106 | IPR000504 | GO:0003723 | |
Stsc151138g00012 | 153 | CDD | RRM2_NsCP33_like | 33 | 108 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc151138g00012 | Stsc-Chr151138 | 76090 | 78922 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc151138g00012 | 7 | 114 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 28.704 | 3.02e-09 | 52.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc151138g00012 | - | - | gmx:100527220 | 178.718 |