Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151138g00012 ATGGCATTGTGTAACAAGCTTGGAAATTTATTGAGACAGAGTGCTCTCCGAAGTGGTTCATCCATGCTCAATTATATTCGCTGCATGTCCTCAAGCAGGCTTTTCATTGGGGGCCTTTCATATGGAGTTGATGACCAGAGTCTTAGGGATGCATTCTCCGGCTTTGGCGATGTGGTTGATGCAAGGGTTGTCACTGATAGAGACACCGGAAGATCAAGAGGTTTTGGATTTGTTAACTTCTCAAGCGAGGAGTCTGCTGGCTCAGCTCTCTCTTCAATGGACGGGAAGGATCTAAATGGCCGAGTGATTAGGGTGAGCTATGCAAATGATAGGCCTCCTCGAGGTGGTGGTGGTGGTTATGGTGTTGGTGGTGGTGGTTATGGTGGTGGTGGTGGTTACGGGGGAGGTGGTTACCGTAGAGGTGGAGGAGGAGGTGGTGGTTATGGTGATCCATCTTTTTAG 462 0.4913 MALCNKLGNLLRQSALRSGSSMLNYIRCMSSSRLFIGGLSYGVDDQSLRDAFSGFGDVVDARVVTDRDTGRSRGFGFVNFSSEESAGSALSSMDGKDLNGRVIRVSYANDRPPRGGGGGYGVGGGGYGGGGGYGGGGYRRGGGGGGGYGDPSF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151138g00012 153 Gene3D - 27 150 IPR012677 -
Stsc151138g00012 153 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 30 151 - -
Stsc151138g00012 153 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Stsc151138g00012 153 SUPERFAMILY RNA-binding domain, RBD 29 142 IPR035979 GO:0003676
Stsc151138g00012 153 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Stsc151138g00012 153 SMART rrm1_1 33 106 IPR000504 GO:0003723
Stsc151138g00012 153 CDD RRM2_NsCP33_like 33 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151138g00012 Stsc-Chr151138 76090 78922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151138g00012 7 114 Eukaryotic Initiation Factors Gene Family AT2G23350 28.704 3.02e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151138g00012 - - gmx:100527220 178.718