Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151138g00006 ATGGCCGCAGAAATTTGTCGCGCGTCTCTTCTCTTATCCGTTAAAACTCAACTTCTTCACGCGCCACCATCAACCACCACCACCTCCACCACCAGGTTCCACACATCATCTCATTCCAAAACTTCCTTCTTCTCTCACCGCTTTCTCAATCCAAATGCCTCTTCCTCCGCCGTCCGTCGCCGCAGCTCGGCCGTCACCTGCCAGGCTAGCACTCTCTCCGAGATCGACTCCGCCGCAAAAGCCGGCCAGGACCGTCTCTTGAAGGTGCCGGTGTCGAATATAAGGAACTTCAGCATAATTGCGCATATTGATCACGGGAAATCTACGCTCGCCGATAAATTGCTTCAGGTTACTGGCACGGTTCACCAGCGAGAGATGAAGGATCAGTTTCTTGATAACATGGACCTCGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCTCGAATGCGGTACGTGTTTGAGAATGAACCATATTGCTTGAATTTGATTGATACTCCGGGGCATGTTGACTTCTCGTATGAGGTTTCTCGGTCACTTGCTGCATGTGAAGGTGCCCTTCTTGTGGTAGATGCTTCTCAGGGAGTAGAAGCACAAACACTAGCTAATGTTTATTTGGCCTTGGAAAACAACCTAGAGATTATCCCGGTTTTGAACAAGATAGATCTTCCGGGTGCTGAACCAGATCGAGTTATTAAGGAGATTGAAGAGATTGTGGGTCTGGATTGTAGCAATGCTATTCTGTGCTCTGCCAAGGAAGGAATAGGTATAATTGATATTCTCAATGCAATTGTTGCGAGAATTCCACCACCTGCTGATACATCACAAAGGCCATTAAGGGCTTTAATATTTGATAGTTACTATGATCCATACAGAGGGGTTATTGTATACTTTCGAGTTGTGGATGGGACAATAAAGAAAGGTGATAGAGTCTATTTTATGGCTAGTGGGAAGGATTATTTTGCTGATGAAATTGGAGTCTTGTCTCCGAATCAACAAGAGGTTAAAGAATTATATCCCGGAGAGGTGGGCTATCTGTCAGCATCAATAAGAACAGTAGCTGATGCCAGAGTGGGTGACACAGTTACTCACTTTGGTCGAAAGGCAGATCAGTCACTCCCTGGATATGAGGAAGCAACTCCTATGGTTTTCTGCGGCCTGTTTCCTGTTGACGCTGACCAATTTCCTGATCTACGTGATGCTCTTGAGAAGCTACAACTTAATGATGCTGCACTGAAGTTTGAACCTGAGACTTCAAGTGCCATGGGATTTGGGTTTAGATGTGGGTTTCTGGGTCTTCTCCACATGGAAATTGTCCAGGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACTACCGCTCCAAGTGTTGTTTACAGAGTGAACTGTGTTGACGGAGAAACTGTTGAATGCTCGAATCCATCTTTACTTCCTGAACCTGGAAAAAGGAGATCAATTGAGGAACCATATGTTAAGATTGAGATGCTTTCGCCAAAGGATTATATTGGGTCACTTATGGAACTGGGACAAGACAGAAGAGGAGTGTTCCAAGAAATGAAATTTATCACTGAAAATAGAGCATCAATCACCTACGAAATACCACTAGCGGAGATGGTTGGTGATTTCTTTGACCAGTTAAAGTCGAGAAGTAAGGGTTATGCTAGTATGGAGTATAACCTTATCGGGTACAGAGAAAGTGATTTAGTTAAACTTGACATATTGATAAATGGTGACTGTGTGGAGCCATTGGCTACGATTGTGCACAGAGATAAGGCATATTCTGTGGGAAGGGCTTTGACTCAAAAGCTGAAGGAGCTCATACCACGTCAAATGTTTAAAGTACCAATCCAAGCATGCATAGGATCGAAAGTGATTGCTAGTGAAGCTCTATCTGCGATAAGGAAGGATGTACTAGCCAAATGCTATGGTGGTGACATTTCGAGGAAAAAGAAGTTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCCATTGGTAAAGTTGATGTGCCTCAAGAAGCTTTCATGGCGGTTTTGAAATTGGAAAAGGAGGTCATATGA 2070 0.4415 MAAEICRASLLLSVKTQLLHAPPSTTTTSTTRFHTSSHSKTSFFSHRFLNPNASSSAVRRRSSAVTCQASTLSEIDSAAKAGQDRLLKVPVSNIRNFSIIAHIDHGKSTLADKLLQVTGTVHQREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVARIPPPADTSQRPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPNQQEVKELYPGEVGYLSASIRTVADARVGDTVTHFGRKADQSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVDGETVECSNPSLLPEPGKRRSIEEPYVKIEMLSPKDYIGSLMELGQDRRGVFQEMKFITENRASITYEIPLAEMVGDFFDQLKSRSKGYASMEYNLIGYRESDLVKLDILINGDCVEPLATIVHRDKAYSVGRALTQKLKELIPRQMFKVPIQACIGSKVIASEALSAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151138g00006 689 CDD lepA_C 490 569 IPR035654 -
Stsc151138g00006 689 SMART EFG_C_a 487 575 IPR000640 -
Stsc151138g00006 689 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 86 686 IPR027518 -
Stsc151138g00006 689 Hamap Elongation factor 4 [lepA]. 89 687 IPR006297 GO:0005525
Stsc151138g00006 689 FunFam Translation factor GUF1, mitochondrial 275 373 - -
Stsc151138g00006 689 FunFam Translation factor GUF1, mitochondrial 375 456 - -
Stsc151138g00006 689 NCBIfam translation elongation factor 4 93 684 IPR006297 GO:0005525
Stsc151138g00006 689 Gene3D Elongation Factor G (Translational Gtpase), domain 3 375 456 - -
Stsc151138g00006 689 Gene3D - 91 274 IPR027417 -
Stsc151138g00006 689 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Stsc151138g00006 689 NCBIfam small GTP-binding protein domain 95 264 IPR005225 GO:0005525
Stsc151138g00006 689 FunFam Translation factor GUF1, mitochondrial 457 567 - -
Stsc151138g00006 689 SUPERFAMILY EF-G C-terminal domain-like 381 459 IPR035647 -
Stsc151138g00006 689 SUPERFAMILY Translation proteins 254 376 IPR009000 -
Stsc151138g00006 689 SUPERFAMILY EF-G C-terminal domain-like 488 582 IPR035647 -
Stsc151138g00006 689 Pfam Elongation factor Tu domain 2 294 364 IPR004161 GO:0005525
Stsc151138g00006 689 Pfam Elongation factor G C-terminus 488 575 IPR000640 -
Stsc151138g00006 689 Gene3D Translation factors 275 374 - -
Stsc151138g00006 689 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 92 273 IPR000795 GO:0003924|GO:0005525
Stsc151138g00006 689 Gene3D - 457 568 - -
Stsc151138g00006 689 Gene3D - 569 643 IPR038363 -
Stsc151138g00006 689 PRINTS GTP-binding elongation factor signature 215 224 IPR000795 GO:0003924|GO:0005525
Stsc151138g00006 689 PRINTS GTP-binding elongation factor signature 179 190 IPR000795 GO:0003924|GO:0005525
Stsc151138g00006 689 PRINTS GTP-binding elongation factor signature 139 147 IPR000795 GO:0003924|GO:0005525
Stsc151138g00006 689 PRINTS GTP-binding elongation factor signature 163 173 IPR000795 GO:0003924|GO:0005525
Stsc151138g00006 689 PRINTS GTP-binding elongation factor signature 96 109 IPR000795 GO:0003924|GO:0005525
Stsc151138g00006 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 290 IPR027417 -
Stsc151138g00006 689 CDD LepA 95 272 - -
Stsc151138g00006 689 CDD EF4_II 280 365 - -
Stsc151138g00006 689 Pfam GTP-binding protein LepA C-terminus 577 683 IPR013842 -
Stsc151138g00006 689 Pfam Elongation factor Tu GTP binding domain 93 270 IPR000795 GO:0003924|GO:0005525
Stsc151138g00006 689 CDD EF4_III 382 457 - -
Stsc151138g00006 689 FunFam Elongation factor 4 91 274 - -
Stsc151138g00006 689 FunFam Translation factor GUF1, mitochondrial 569 643 - -
Stsc151138g00006 689 PANTHER TRANSLATION FACTOR GUF1-RELATED 70 684 IPR006297 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151138g00006 Stsc-Chr151138 25224 34111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151138g00006 94 327 Eukaryotic Initiation Factors Gene Family AT3G22980 33.603 1.48e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151138g00006 K21594 - gmx:100809693 1145.95