Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151136g00019 ATGGATTTAATGAGAATCCAAAGCTCTTTTTCTCATAAGAAGAATTGGAAATATGATGTGTTTGTAAGTTTCAGAGGTGAGACTCGCTACAATTTCGCGGATCATCTTTTTGATGCTCTCCACAGACATGGCATACTTGCTTTCAGGGATGATACTAAGCTTGAGAAAGGAGGACCTATTTCAGAAGGGCTTCTGCAAGCTATTGAAGGATCACAAGTTCTGATTGTGGTCTTCTCAATGAATTATGCTTCTTCAACATGGTGCTTGCAAGAACTCGCAAAGATAGCTGATTGCATTCAAATACCGGGACACTGTGTTCTGCCTGTTTTCTATGATGTGACTCCAACAGAGGTGAGAAGGCAAACTGGAAATTATGAAAAAGCCTTTATGAAACATGAACAAAGATTCAAAGATAATGCAGAGATGATGGAGCAAGTGCGAAGATGGAGGGCAGCTCTGACACAAGTAGCAAATCTCTCTGGCTGGGATGTGAAGGACAAGTCACAATCTGCTGAGATTGAAAAAATTGTCAAAGCGGTAACAAACTTCTTGAAATCCAAAGCATCATCAAGTGTATCAAATGATATAGTTGGGATGCAATCCCCTTTAGAAGAACTAAAAAAGCTTCTAGCTTTGGGTTTGGATGATGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGTGGTATAGGAAAGTCAACTCTTGCCACCATTTTATATGAAAAAATCTCTCATCAATATGATGCTTCATGTTTTGTAGATGATGTAAGCAAAACATATGGAGATCATGGTCCACTTGGTTTACAAATGCAACTCCTTTGCCAAGCTTTTCCGGAAGAAAATTTTGCAATATGCAATTTTATATTGGCAAATAATCTGATTCAAACAAGGTTATGTCATAGAAAGGTTCTCGTAGTTTTGGATAATGTTGATCAGGGGATTCAGTTGGAGAAGCTGGCTTTAAAACGGGAATGGATAGGTAGAGGGAGTAGAATAATAATAGTTTCCAGAGATGATCATATATTGAGAGAGTATGTAGTGGATGGAGTTTACAAAGTTAAACTCTTAAATCATGAGAATGCTCTCCAACTGTTTTGCAGAAAAGCTTTCAAATGTAATCATGTTCCAAAAGATTATGAAAGCCTGACAAATTCTGCATTAAGATATGCTAATGGACTTCCATTAGCAATCAAAGTATTGGGCTCTTTTTTGTTTGACCGAGATATTTCTGAGTGGAGCAGTGCATTGGTTAGATTGAAAAAAAATCCTAAAAAAGATATTATGGATGTCCTTCGAATTAGTTTTGATGGACTAGAGAGTACGGAAAAGAAAATATTTCTTGATATTGCCTGTTTCTTTTCCAAACAGGATGAAAAATATGTGAAAGATATTCTACATATTCGAGGATTTCATCCTGATATTGGTATAAGAATTCTCATTGATAAATCACTCATAACTTGTAATAATCGGGGTCAGATTGTTATGCATGATCTGTTGATAGAGTTGGGAAGAAGCATTGTTCGAAAAAAGTCACCCAAAAGCCCAAGAAAGTGGAGCAGGTTATGGAATCAACGGGATCTAAGCAATGTCCTAAAGAAAAACAAGATAGCAAAGAACCTTGAAGCAGTAATAGTTGTGCCAAAGATTTTTAAAATTAGGAAAGAGATGTCAGCTGAAGCTTTATCCCAAATGAGTCGCCTGGAAGTACTCAAACTTGGCAATATGAATTTCTCAGGATGTCCCCATTTTCTTTCTAACAAGTTGAGATATCTTTCTTGGTGTGGATATCCTTTCACATGTTTGCCATCAAACTTTCAGCCAAATAAACTGGTCAAATTAATTCTACATGATAGCAACATCAAAGAACTCTGGAAAGGAACAAAGGATCTTCATAATTTGACACATTTGGAACTATGTCATTCCAAAAATCTACGGAAGATACCAAATTTATCACAAGCCCAAAATCTTGAGGAGCTAAATCTTGAAGGATGTGTTAAACTTGTTCACCTTGATGCATCCATTGGTTCTCCACAAAAGCTTTGTTCTTTGAACCTGAAAAACTGCAAAAATCTTGTAAAGATACCAAATTTATCTCAGGCCCCAAATCTTAGGAGCCTAAATCTTGAAGGAAACTTTATATTCCATCTTAATTCTCTTTGTAATCTAAATCTATCCGACTGTTGGAAATTACTTAAAGATCCGTTGTTAGAGGCTCCAAGGCAGAGCGAGCAGTTGAATGCAGGTAGACGTGTAGAGAGGCACATAACATCCTCCATATGCAAATCTCTGACAAGGCCTCTCAATTTTTTATCTTCTAGAAGGCATGACAATTCAGTTGGTTCGTTGCTGCCCTCTTTGTATCGTTTCCCAGCATTGACATATCTTGACATAAGTTTCTGTAATCTAGCTCAAATCCCTGATGCTATTGGACAGTTAAGTTGTTTAGAAGGTTTAAACATAGGGGGAAACAATTTTGTGACGCTACCTCATTGCATCAAGGAACTTCCCAAGTTAAGGTATTTGAATTTGGAGTACTGTATGCATCTAAAGTGGTTGCATCTAAAGTGGTTGCCTACTGCCCTTTTGCCGATAGGAAGAAATCGCTATCAAGGATTATGTGTTTTCAACTGCCCCAAATTGAGTGACACACAAGGTTGTCGTCTAACAGTTATTTCATGGATGATCAAAATGATTCAGGTGAACATGCAAGGCATCATTCACGTTGTTACTCCGGGAAATAAAATTCCAAGGTGGTTCAACAAACAGAATGTGGGCCCTTCAATAAAGCTGGATCTATCTCCCATTGTGGATGACAATAATTGGATTGGCATTGCTTGTTGCGTAACATTTGTTGTGCATGATGTTCCAACTCAATTTCTTGACGAAGAGAAATATATTCTTCGTCTTCTTTGTTGTGGTTTTGCTAGTCATCGTGGTCGGGGAGTTGGGGGTAGATTTTTAATTGTTCCAATAAGTCTTAAGCGTGATTTGATCACTACTAAATTAGAGCATATGTTGCTACTATTTTACTCCCGGGAAAAAATCATGAGTAGTTACATTTGTGACTTAAAAGAAGGAACATCTGATCTTGATGGTATTGAATTTACCTCCGTGAGTTCTTTTCCAAGGCAAGTAGAAGTGAGGAGTTGTGGTTACCGTTGGGCATTCAAGCAAGATTTGTAA 3183 0.3751 MDLMRIQSSFSHKKNWKYDVFVSFRGETRYNFADHLFDALHRHGILAFRDDTKLEKGGPISEGLLQAIEGSQVLIVVFSMNYASSTWCLQELAKIADCIQIPGHCVLPVFYDVTPTEVRRQTGNYEKAFMKHEQRFKDNAEMMEQVRRWRAALTQVANLSGWDVKDKSQSAEIEKIVKAVTNFLKSKASSSVSNDIVGMQSPLEELKKLLALGLDDDDVRVVGICGMGGIGKSTLATILYEKISHQYDASCFVDDVSKTYGDHGPLGLQMQLLCQAFPEENFAICNFILANNLIQTRLCHRKVLVVLDNVDQGIQLEKLALKREWIGRGSRIIIVSRDDHILREYVVDGVYKVKLLNHENALQLFCRKAFKCNHVPKDYESLTNSALRYANGLPLAIKVLGSFLFDRDISEWSSALVRLKKNPKKDIMDVLRISFDGLESTEKKIFLDIACFFSKQDEKYVKDILHIRGFHPDIGIRILIDKSLITCNNRGQIVMHDLLIELGRSIVRKKSPKSPRKWSRLWNQRDLSNVLKKNKIAKNLEAVIVVPKIFKIRKEMSAEALSQMSRLEVLKLGNMNFSGCPHFLSNKLRYLSWCGYPFTCLPSNFQPNKLVKLILHDSNIKELWKGTKDLHNLTHLELCHSKNLRKIPNLSQAQNLEELNLEGCVKLVHLDASIGSPQKLCSLNLKNCKNLVKIPNLSQAPNLRSLNLEGNFIFHLNSLCNLNLSDCWKLLKDPLLEAPRQSEQLNAGRRVERHITSSICKSLTRPLNFLSSRRHDNSVGSLLPSLYRFPALTYLDISFCNLAQIPDAIGQLSCLEGLNIGGNNFVTLPHCIKELPKLRYLNLEYCMHLKWLHLKWLPTALLPIGRNRYQGLCVFNCPKLSDTQGCRLTVISWMIKMIQVNMQGIIHVVTPGNKIPRWFNKQNVGPSIKLDLSPIVDDNNWIGIACCVTFVVHDVPTQFLDEEKYILRLLCCGFASHRGRGVGGRFLIVPISLKRDLITTKLEHMLLLFYSREKIMSSYICDLKEGTSDLDGIEFTSVSSFPRQVEVRSCGYRWAFKQDL 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151136g00019 1060 FunFam Disease resistance protein (TIR-NBS-LRR class) 357 439 - -
Stsc151136g00019 1060 Pfam TIR domain 17 192 IPR000157 GO:0007165
Stsc151136g00019 1060 Pfam Leucine rich repeat 790 846 IPR001611 GO:0005515
Stsc151136g00019 1060 ProSiteProfiles Leucine-rich repeat profile. 702 723 IPR001611 GO:0005515
Stsc151136g00019 1060 Pfam Leucine Rich Repeat 609 628 IPR011713 -
Stsc151136g00019 1060 Gene3D Ribonuclease Inhibitor 746 892 IPR032675 -
Stsc151136g00019 1060 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Stsc151136g00019 1060 Gene3D - 181 348 IPR027417 -
Stsc151136g00019 1060 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 162 IPR035897 -
Stsc151136g00019 1060 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 853 IPR044974 GO:0006952
Stsc151136g00019 1060 Gene3D - 355 439 IPR042197 -
Stsc151136g00019 1060 Gene3D - 14 180 IPR035897 -
Stsc151136g00019 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 449 IPR027417 -
Stsc151136g00019 1060 PRINTS Disease resistance protein signature 833 849 - -
Stsc151136g00019 1060 PRINTS Disease resistance protein signature 221 236 - -
Stsc151136g00019 1060 PRINTS Disease resistance protein signature 297 311 - -
Stsc151136g00019 1060 PRINTS Disease resistance protein signature 390 404 - -
Stsc151136g00019 1060 SUPERFAMILY L domain-like 495 854 - -
Stsc151136g00019 1060 SMART till_3 17 159 IPR000157 GO:0007165
Stsc151136g00019 1060 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc151136g00019 1060 Pfam NB-ARC domain 204 425 IPR002182 GO:0043531
Stsc151136g00019 1060 Pfam C-JID domain 911 1059 IPR045344 -
Stsc151136g00019 1060 Gene3D Ribonuclease Inhibitor 550 713 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151136g00019 Stsc-Chr151136 106768 110531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151136g00019 10 841 WRKY Transcription Factor Family AT4G12020 30.164 1.42e-87 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151136g00019 - - aip:107628789 1076.62