Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151136g00018 ATGGATTTAATGAGAATCCAAAGCTCCTCGTCTCATATGAAGAATTGGAAATATGATGTGTTTGTAAGTTTCAGAGGTGGTGATACTCGCAACAACTTCACCGATCATCTTTTTTATGTTCTCCGTAGACACGGCATACTTGCCTTCAGGGATGATACTAAGCTTCAGAAAGGAGGACCTATATCAGAAGGGCTTACGCAAGCTATTGAAGGATCACATGTTCTGATTGTTGTCTTCTCAATGAACTATGCTTCTTCCACGTGGTGCTTAAGAGAACTCGCAAACATAGCTAATTGCATTCAAATACCGGGACAGCATGTTCTGCCTATTTTCTATGATGTGAGTCCAGCTGAAGTGAGATGGCAAAGTGGAAATTATGAAAAAGCATTTATGAAACATGAACAAAGATACAAAGATGATGCAGAGATGATGGAGCAAGTGCAAAGATGGAGGGCAGCTCTAACACAAGTTGCAAATCTCTCTGGCTGGGACGTGAAGGATAAGCCACAATCTGCTGAGATTGAAAGAATTGTCAAAGCAGTATCAGGAACATTGAGTGCCAAACCATCATCAAGTGTATCAAATGATATAGTTGGGATGCAATCCCCTTTACAAGAACTAGAAAGGCTTCTAGCTTTGGGTTTGGATGATGTTGTTCGAGTTGTAGGAATTTGTGGAATGGGTGGTATCGGAAAGTCAACTCTTGCCACCATTTTATATGAAAAAATCTCTCATCAATATGATGTTTCTTTTTTTGTAGATGATGTAAGTAAAACTTACAGAGATTATGGTCAGCTTGGTTTACAAAGGCAACTCCTTTATCAAGCTTTTCCGGAAGAAAATTTTGCCACATGCAATTTTTTATTGGCGAATAATCTGATTCAAAGTAGGTGTCTTCATAGAAAGGTTTTGATAGTTCTGGATAATGTTGAAAAGGGGATTCAATTAGAGAAATTGGCTATAAAACGGGAATGGGTAGGTAGAGGGAGTAGAATAATTATAGTTTCTAGAGATGAACATATATTGAGAGAGTATGGAGCAGATGAAGTTTACAAAGTTAAACTCTTAAATCATGAGAATGCTCTGCAATTGTTTTGTAAAAAAGCTTTCAAAAGTAATCATGTTGTAAAAGATTATGAAAGCCTGACAGAGTCTGCATTAGGATATGCTAAGGGACTTCCGTTAGCAATAAGAGTATTGGGCTCATTTTTGTTTGGGCGAGATGTCTCGCAGTGGAGTAGTGCATTGCTTAAACTAGAAGAGAAGTCACCAAAAGATATTATGGATGTGCTACGAGTCAGTTTCGATGGACTTGAGGATATGGAAAAGGATATATTTCTTGATATTGCTTGTTTCTTTCCTCATGATTATGAAAGATACGTGAAAGATATTTTACGTATTCGAGGATTTCATCCTGATATTGTAATAAGAACTCTCATTGATAAATCACTCATAACTTGTTATGGGGAGTGGATCGTCATGCACAATATGTTGAGAGATTTGGGTAGAAACATTGTTCGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAGCAGGTTATGGAAACAAAAGGATCTAAGCCATGTCTTGCGGGAAAGCAAGGCAGCAAAGAACCTTGAAGCTATAGTTCTATCAACATATCCTGAAATTACGGAAGAATTATCTGTTGAAGCTTTATCAAAAATGAATCAGCTGAAACTACTCATACTTGGCAAAGTGAATTTCTCAGGAAGCCTGCATTTTCTTTCTAATGAATTGGGATATGTTGAATGGAAGGGATATCCTTTCACATGTTTGCCATCAAGCTTTCAGCCAAATAAACTCGTTAAATTAATCCTACATCATAGCAACATCAAAGAACTCTGGCAGGGCATAAAGGATCTACATAATTTGTCACGTATGGAACTATGTCATTCCAAAAATCTTGTAAAGATACCAAATTTGTCTCAGGCCCCAAATCTTGAGCACCTAAATCTTGAAGGATGTGTTAAACTTGTTCACCTTCATCCATCCATTGGTTCTCTCGAAAAGCTTCGCTTCTTGAATCTGAAAAACTGCAAAAATCTAGTAAATATACCAAATTTATCTCAGACCCCAAATCTTGAGCATCTGGATCTTAAAGGATGTGATAAACTTGTTCACCTTGATGCATCCATTGGTTCTCTAAAAAAGCTTTGTTTCTTGAATCTGGAAAACTGCAAAAAACTTGTTAGTATTCCCAATACCATATTTCATCTTAATTCTCTTAAAATTTTAATCCTATCTGGCTGTTCAAAATTATTCAAGTATCAGTTGTTAGAGAAACCAAAAAAAAGCGAGCAGTTGAATAGAGATCAAAGTGTAGAACTAGAAAGGCAGATGAGAAACTCCAGATGCAAAACTCTTATCACAAGGCCTCTCCATTTTATATCTTCTAGAAGGCAAGCCGATTCAGTTGGTTTGCTGCTGGTGCCTTCATTGTCTGGTTTCCCAGCTTTGACATATCTTGACATAAGTTTCTGTAATCTAGTTCAAATCCCCGATGCTGTTGGAAATTTACTTTGTTTAGAAAGCTTAAACATAGGGGGAAACAATATTATTACACTACCTGATTGCATCAAGAAACTTCCCAAGCTAAGGGAGTTGAACTTGGAGTATTGTATGCATCTAAAGTGGTTGCCTACTACCCATTTGCCCATAGGAAGAGTTAGACATGGAGGATTATATGTTTTCAACTGCCCCAAATTGAGTGATACGGAAGATTGTCGACAAACAGCTATTTCATGGATGATAAAAGTGATTAAGTGCCAGGTGAACCTGCAACACTCTTTCCCTAGATGCCACATTGAAGTTGTTATTCCAGGAAGTAAAATTCCAAGGTGGTTCAACAAACAGAACACGGGTGATTCAGTGAGGCTGGATACATCTCCAATTCTGTATGACGATAATTGGATTGGCATTGCTTGTTGTGTAACATTTGTTGTGCATGATACTCCAACACAATTCCTTGAACAAGAGATACATACTCCCTCTCTAATTAGTTGTGGTTTTCGTAGTCCTGAGTACGGGGAATTTTATTCCGGAGTTCCATTACATCTTAAGAAAGATTTGATCACAACTGAATTAGATCATATGTTGCTAATGTTTTTCACCAGGGATGTTTTCAGTGATTTAAAAGAAGGAGAATCTGATCTTCATGGTATTGGACTGGCCTTGGCCACTGAGAGTGATTATCCAGAACAAGTAGTACAAGTGAAGAGTTGTGGTTACCGTTGGGTATTTAAGCGAGATTTGGAACAATAA 3282 0.3754 MDLMRIQSSSSHMKNWKYDVFVSFRGGDTRNNFTDHLFYVLRRHGILAFRDDTKLQKGGPISEGLTQAIEGSHVLIVVFSMNYASSTWCLRELANIANCIQIPGQHVLPIFYDVSPAEVRWQSGNYEKAFMKHEQRYKDDAEMMEQVQRWRAALTQVANLSGWDVKDKPQSAEIERIVKAVSGTLSAKPSSSVSNDIVGMQSPLQELERLLALGLDDVVRVVGICGMGGIGKSTLATILYEKISHQYDVSFFVDDVSKTYRDYGQLGLQRQLLYQAFPEENFATCNFLLANNLIQSRCLHRKVLIVLDNVEKGIQLEKLAIKREWVGRGSRIIIVSRDEHILREYGADEVYKVKLLNHENALQLFCKKAFKSNHVVKDYESLTESALGYAKGLPLAIRVLGSFLFGRDVSQWSSALLKLEEKSPKDIMDVLRVSFDGLEDMEKDIFLDIACFFPHDYERYVKDILRIRGFHPDIVIRTLIDKSLITCYGEWIVMHNMLRDLGRNIVREKSPKEPRKWSRLWKQKDLSHVLRESKAAKNLEAIVLSTYPEITEELSVEALSKMNQLKLLILGKVNFSGSLHFLSNELGYVEWKGYPFTCLPSSFQPNKLVKLILHHSNIKELWQGIKDLHNLSRMELCHSKNLVKIPNLSQAPNLEHLNLEGCVKLVHLHPSIGSLEKLRFLNLKNCKNLVNIPNLSQTPNLEHLDLKGCDKLVHLDASIGSLKKLCFLNLENCKKLVSIPNTIFHLNSLKILILSGCSKLFKYQLLEKPKKSEQLNRDQSVELERQMRNSRCKTLITRPLHFISSRRQADSVGLLLVPSLSGFPALTYLDISFCNLVQIPDAVGNLLCLESLNIGGNNIITLPDCIKKLPKLRELNLEYCMHLKWLPTTHLPIGRVRHGGLYVFNCPKLSDTEDCRQTAISWMIKVIKCQVNLQHSFPRCHIEVVIPGSKIPRWFNKQNTGDSVRLDTSPILYDDNWIGIACCVTFVVHDTPTQFLEQEIHTPSLISCGFRSPEYGEFYSGVPLHLKKDLITTELDHMLLMFFTRDVFSDLKEGESDLHGIGLALATESDYPEQVVQVKSCGYRWVFKRDLEQ 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151136g00018 1093 Pfam Leucine Rich Repeat 607 626 IPR011713 -
Stsc151136g00018 1093 Gene3D - 187 349 IPR027417 -
Stsc151136g00018 1093 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Stsc151136g00018 1093 SUPERFAMILY "Winged helix" DNA-binding domain 426 530 IPR036390 -
Stsc151136g00018 1093 Pfam TIR domain 17 195 IPR000157 GO:0007165
Stsc151136g00018 1093 Gene3D Ribonuclease Inhibitor 522 694 IPR032675 -
Stsc151136g00018 1093 Gene3D Ribonuclease Inhibitor 792 918 IPR032675 -
Stsc151136g00018 1093 Gene3D Ribonuclease Inhibitor 695 791 IPR032675 -
Stsc151136g00018 1093 Pfam NB-ARC domain 220 424 IPR002182 GO:0043531
Stsc151136g00018 1093 Gene3D - 355 439 IPR042197 -
Stsc151136g00018 1093 Pfam Leucine rich repeat 824 880 IPR001611 GO:0005515
Stsc151136g00018 1093 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 687 IPR044974 GO:0006952
Stsc151136g00018 1093 SUPERFAMILY L domain-like 544 909 - -
Stsc151136g00018 1093 SMART till_3 17 160 IPR000157 GO:0007165
Stsc151136g00018 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 449 IPR027417 -
Stsc151136g00018 1093 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 187 - -
Stsc151136g00018 1093 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 163 IPR035897 -
Stsc151136g00018 1093 Gene3D - 11 186 IPR035897 -
Stsc151136g00018 1093 PRINTS Disease resistance protein signature 297 311 - -
Stsc151136g00018 1093 PRINTS Disease resistance protein signature 744 760 - -
Stsc151136g00018 1093 PRINTS Disease resistance protein signature 221 236 - -
Stsc151136g00018 1093 PRINTS Disease resistance protein signature 390 404 - -
Stsc151136g00018 1093 Pfam C-JID domain 946 1092 IPR045344 -
Stsc151136g00018 1093 Coils Coil 1088 1093 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151136g00018 Stsc-Chr151136 99024 102942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151136g00018 18 812 WRKY Transcription Factor Family AT4G12020 30.227 3.12e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151136g00018 - - aip:107628789 1454.88