Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151136g00016 ATGGATTGCATCGGAATAAAAAACTCCTTGTCTCATAGAAAGAATTGGAAATATGATGTGTTTGTCAGTTTCAGGGGCGACACTCGCTTCAACTTCACTGATCACCTTTTTGCTGCTCTCCACAGACACGGCATACTTGCCTTTAGGGATGATACTAAGCTCCAGAAAGGAGGACCTATATCACCAGGGCTTCTGCAAGCTATTGAAGGATCACATGTTCTGATTGTTGTCTTCTCAATAAACTATGCTTCCTCCACATGGTGCTTGCAAGAGCTGGCAAAGATAGCTGCTTGCATTCAAGAAACGGGACAGTGTGTTCTGCCTGTCTTCTATGATGTGAGTCCATCTGAGGTCAGAAAGCAGAGTGGAAACTATGAAGCAGCCTTTAAGAAACATGAAGAAAGATTCAAAGATGATGCAGACATGATGGAGCAACTTCCAAGATGGAGGGAAGCTCTAACACAAGTAGCCAATCTCTCTGGCTGGGATGTCAGGGATAAGTCACAATCTGCTGAAATTGAAAAAATTGTCAAAGTGGTAACCAGCACATTGAGTCCCAAACAATCCTCAAGTCCATCTAATGATATAGTCGGAATGCAGTCCCCTTTAGAAGATCTAGAAAAGTTTCTAGTTTTGGACTCAGAAGATGATGTTCGAGTTGTAGGCATTTGCGGAATGGGCGGCATAGGAAAGTCAACTCTCGCCACTACTTTATATGAAAAAATCTCTCATCCATATGATATTTCATGTTTTGTAGATGATGGGATTCAGTTGGAGAAGTTGGCTATAAAACGGGAGTGGGTAGGTAGAGGGAGTAGAATAATCATAGTTTCTAGGGATGAACATTTATTGAGAGAGTATGGAGCAGATGATGTTTACAAAGTTAAACTCTTAAACGATGAGAATTCTCTCCAATTGTTTAGCAGAAAAGCTTTCAAATTTAATCTTGTTACAAAAGGTTATGAAAGCCTGACAAAGTCTGCATTAGCATATGCTAATGGACTTCCCTTAGCAATTAAAGTATTGGGCTCATTTTTGTTTGGGCGAGATACTTCTGAGTGGAGGAGTGCATTGGTTAGATTGAAAGAAAAGCCAACGAAAGATATTATGGATGTACTACGAATCAGTTTTGATGGACTTGAGGACATGGAAAAGGAAATATTTCTTGATATTGCATGTTTCTTTGACAACCATGTCTTTAGAGGACATGTAAAGGATATTTTACGGATTCGAGGATTTCACGCTGATATTGGTATAAGAATTCTCATTGATAAATCACTCTTAACTTATAAGGCAGGTACTTTCTTTATGCATGATCTGTTGAGAGAGTTGGGTAGAAGTATTGTTAAAGAAAAATCACCCAAAGAACCAAGAAAGTGGAGCAGGTTATGGAATCACAAGGATCTAAGCAATGTTCTGCAGGAAAACAAGACAGCAGAGAACATTGAAGCCATAGTAGTTCAGCAAAAATTACATGGAAATAGGAAAGAACTGTCAGCTGCTGAAGCTTTATCACAATTGAGTTGCCTGAAATTACTCATAATTAGCCAACCAAATAAGTTGGTTAAATTAATCCTAAGTCATAGCAACATCAAAAAACTCTGGAAGGGAATAAAGGTTCTTCATAATTTGACACATCTGGAATTATGCCATTCTAAAAATCTAGTGAAGATACCAAATTTATCTCAGGCCCCAAATCTTGAGCGCCTAGATCTTAAAGGATGTGTTAAACTCATTTACCTTGATGCATCCGTTGGTTCTCTACAAAAGCTTCGTTTCTTGAATCTAGAAAACTGTGAAAACCTTGTTAGCATTCCCAACAGCATATTTGATCTTAATTCTCTTCGATGTTTTAATCTATCTGGCTGTTGGAAATTATTTAAATATCAGCTGTTAGAGAAAGCAAGGCAAAGCGAGCAGTTGAATACAGGTCAAAGTGTAGAGAGACACATGACATCCTCCATATGCAAAACTCTTATAAGGCCTCTCCATTTTTTCTCTTCTAGAAGGCATCCCAATTTAATTGGTTTGTTGGTGCCTTGTTTGTCTCGTTTCCCAGCTTTGACTGCTCTTAACATAAGTTTCTGTAATCTAGTTGAAATACCTGATGCTATTAGACAGTTACCTTGTTTGGAATATTTAAACATAGGGGGAAACAATATTGTTACACTACCTGATTGCATCAAGGAACTTCCCAAACTAAGGCAGTTGAATTTGGAGTACTGTAAGCATCTAAAGTGGTTGCCAAGTACCCTTTTGCCAATGGGAGGTACCAGTGGAAGATTTAAATATGGAGGAACATTTCGTGGATTATGTGTTTTCAACTGCCCCAATTTGAGTGACAAGGAAGGTTGTGGTGTCACAGTTATTTCATGGATGATCAAAATGATTCAGGTGTCAGATTCAATTCCCGCTTTGTTTTCCCTTTTCGATTCTGTCTCTGTATGGTGTGAACTTATGCTGTTACACATACCTAATTTTTATGGTGCCAGGTGA 2496 0.3854 MDCIGIKNSLSHRKNWKYDVFVSFRGDTRFNFTDHLFAALHRHGILAFRDDTKLQKGGPISPGLLQAIEGSHVLIVVFSINYASSTWCLQELAKIAACIQETGQCVLPVFYDVSPSEVRKQSGNYEAAFKKHEERFKDDADMMEQLPRWREALTQVANLSGWDVRDKSQSAEIEKIVKVVTSTLSPKQSSSPSNDIVGMQSPLEDLEKFLVLDSEDDVRVVGICGMGGIGKSTLATTLYEKISHPYDISCFVDDGIQLEKLAIKREWVGRGSRIIIVSRDEHLLREYGADDVYKVKLLNDENSLQLFSRKAFKFNLVTKGYESLTKSALAYANGLPLAIKVLGSFLFGRDTSEWRSALVRLKEKPTKDIMDVLRISFDGLEDMEKEIFLDIACFFDNHVFRGHVKDILRIRGFHADIGIRILIDKSLLTYKAGTFFMHDLLRELGRSIVKEKSPKEPRKWSRLWNHKDLSNVLQENKTAENIEAIVVQQKLHGNRKELSAAEALSQLSCLKLLIISQPNKLVKLILSHSNIKKLWKGIKVLHNLTHLELCHSKNLVKIPNLSQAPNLERLDLKGCVKLIYLDASVGSLQKLRFLNLENCENLVSIPNSIFDLNSLRCFNLSGCWKLFKYQLLEKARQSEQLNTGQSVERHMTSSICKTLIRPLHFFSSRRHPNLIGLLVPCLSRFPALTALNISFCNLVEIPDAIRQLPCLEYLNIGGNNIVTLPDCIKELPKLRQLNLEYCKHLKWLPSTLLPMGGTSGRFKYGGTFRGLCVFNCPNLSDKEGCGVTVISWMIKMIQVSDSIPALFSLFDSVSVWCELMLLHIPNFYGAR 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151136g00016 831 Pfam Leucine rich repeat 686 742 IPR001611 GO:0005515
Stsc151136g00016 831 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 162 IPR035897 -
Stsc151136g00016 831 Pfam TIR domain 17 190 IPR000157 GO:0007165
Stsc151136g00016 831 Pfam Leucine Rich Repeat 520 539 IPR011713 -
Stsc151136g00016 831 Gene3D - 10 182 IPR035897 -
Stsc151136g00016 831 Gene3D Ribonuclease Inhibitor 666 761 IPR032675 -
Stsc151136g00016 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 391 IPR027417 -
Stsc151136g00016 831 SMART till_3 17 159 IPR000157 GO:0007165
Stsc151136g00016 831 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Stsc151136g00016 831 Gene3D Ribonuclease Inhibitor 479 643 IPR032675 -
Stsc151136g00016 831 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 252 627 IPR044974 GO:0006952
Stsc151136g00016 831 PRINTS Disease resistance protein signature 220 235 - -
Stsc151136g00016 831 PRINTS Disease resistance protein signature 586 602 - -
Stsc151136g00016 831 Pfam NB-ARC domain 257 367 IPR002182 GO:0043531
Stsc151136g00016 831 Pfam NB-ARC domain 202 251 IPR002182 GO:0043531
Stsc151136g00016 831 SUPERFAMILY L domain-like 437 750 - -
Stsc151136g00016 831 Gene3D - 183 266 IPR027417 -
Stsc151136g00016 831 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc151136g00016 831 Gene3D - 297 381 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151136g00016 Stsc-Chr151136 84205 87399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151136g00016 197 718 WRKY Transcription Factor Family AT5G45050 27.795 2.53e-54 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151136g00016 - - adu:107476580 1025.77