Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151135g00002 ATGGAAGAAGAGTTCGACATGCCCCAAGCTGAGGAGATGAACGAAGACTTTGATCTCCCCGACGAGAATCCCGTCCTGAAGGTTGGCGAGGAGAAGGAGATCGGAAACCAAGGCCTGAAGAAGAAGCTACTCAAGGAAGGTCAAGGCTGGGATACCCCCGAAGTTGGTGATGAAGTTGAAGTTCACTACACGGGGACTTTGCTTGATGGAACCAAGTTCGATTCGAGCCGCGATAGGGATAGCACTTTTAAGTTCACTCTCGGACAAGGTCAAGTAATTAAAGGATGGGATGAAGGCATTAAAACCATGAAAAAGGGGGAAAATGCTCTTTTCACCATCCCTCCTGCGCTAGCTTATGGTGCATCTGGCTCACCTCCAACTATTCCTCCGAATGCAACACTCCAGTTTGATGTGGAGCTCTTGTCTTGGACTAGTGTGAAAGATATATGCAAGGATGGTGGTATATTTAAGAAAATAGTTAAAGAAGGGGAAGGATGGGAAAACCCCAAGGATCCTGATGAAGTATTAGTTAAGTATGAGGTTTCTCTGGAAGATGGAAAGGCTGTAGCGAAGTCCGACGGAGTGGAGTTCACTGTCAGAGAGGGTCACTATTGTCCTGCATTGTCAAAAGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTTATTTTGACGGTGAAGCCACAATATGGATTTGGTGAGAAAGGGAAGCCAGCTGATGGTGATGAAGGAGCAGTTCCACCAAATGCAACACTGCAGATTACCCTCGAGTTAGTTTCATGGAAGACTGTGTCTGAGGTTACTGATGACAAGAAAGTAGTGAAGAAGATACTCAAAGAAGGGGAAGGATATGAGCGGCCAAATGAGGGGTCTGCCGTGCAAGTGAAACTGATTGGTAAGCTGCAAGATGGCACTGTCTTCGTGAAAAAGGGCCATGAAGAGGAGCTATTTCAATTTAGAACAGATGAAGAGCAAGTCATTGAAGGGCTTGATAGAGGTGTAATGTCCATGAAGAAAGGTGAAGTGGCATTACTGACTATTGCACCTGAGTATGCTTTCGGTTCAGCTGAGTCCCAGCAAGAGTTGGCTGTCGTTCCTCCCAACTCAACTGTGTATTATGAGGTGGAGCTAGTTTCATTCGAGAAGGAGAAGGAGTCTTGGGATCTGAACACTCAAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGAAATGTATTATTTAAAGCTGGTAAATATGCAAGAGCTTCCAAAAGATATGATAAGGCAGTAAAGTATATAGAATACGATTCCTCCTTCAGCGCCGATGAGAAAAAACAGGCCAAGACCTTGAAGGTTGCCTGCAATCTGAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTACAAAGAAGCAGAGAAATTGTGTACAANNNNNNNNNNGTCCCATATATTGATATTTACTTTCCTTGAAAAGCCTCTGACAAAAAATAAAATGGTAATGAGTTAA 1488 0.4348 MEEEFDMPQAEEMNEDFDLPDENPVLKVGEEKEIGNQGLKKKLLKEGQGWDTPEVGDEVEVHYTGTLLDGTKFDSSRDRDSTFKFTLGQGQVIKGWDEGIKTMKKGENALFTIPPALAYGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVKEGEGWENPKDPDEVLVKYEVSLEDGKAVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPADGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVVKKILKEGEGYERPNEGSAVQVKLIGKLQDGTVFVKKGHEEELFQFRTDEEQVIEGLDRGVMSMKKGEVALLTIAPEYAFGSAESQQELAVVPPNSTVYYEVELVSFEKEKESWDLNTQEKIEAAGKKKEEGNVLFKAGKYARASKRYDKAVKYIEYDSSFSADEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTXXXXSHILIFTFLEKPLTKNKMVMS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151135g00002 495 Gene3D - 32 147 IPR046357 GO:0003755
Stsc151135g00002 495 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Stsc151135g00002 495 FunFam Peptidylprolyl isomerase 262 382 - -
Stsc151135g00002 495 SUPERFAMILY FKBP-like 148 264 - -
Stsc151135g00002 495 MobiDBLite consensus disorder prediction 1 32 - -
Stsc151135g00002 495 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Stsc151135g00002 495 Gene3D - 262 381 IPR046357 GO:0003755
Stsc151135g00002 495 SUPERFAMILY FKBP-like 266 397 - -
Stsc151135g00002 495 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 380 IPR001179 GO:0003755
Stsc151135g00002 495 MobiDBLite consensus disorder prediction 1 19 - -
Stsc151135g00002 495 Gene3D - 148 261 IPR046357 GO:0003755
Stsc151135g00002 495 FunFam Peptidylprolyl isomerase 148 261 - -
Stsc151135g00002 495 SUPERFAMILY TPR-like 386 470 IPR011990 GO:0005515
Stsc151135g00002 495 SUPERFAMILY FKBP-like 33 157 - -
Stsc151135g00002 495 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 167 258 IPR001179 GO:0003755
Stsc151135g00002 495 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 141 IPR001179 GO:0003755
Stsc151135g00002 495 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 377 IPR001179 GO:0003755
Stsc151135g00002 495 Gene3D Tetratricopeptide repeat domain 383 474 IPR011990 GO:0005515
Stsc151135g00002 495 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 153 264 - -
Stsc151135g00002 495 FunFam Peptidylprolyl isomerase 29 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151135g00002 Stsc-Chr151135 19634 24417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151135g00002 26 470 Calmodulin-binding Proteins AT3G25230 81.879 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151135g00002 K09571 - gmx:100812632 818.15