Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151134g00001 ATGTCGATGGCTGGCTTGGATTTAGGAACAGCATCACGCTTCGTTCAAAATCTTCACAGACCAGACTTACACCTTCAACAACAACACCATTACCAAGATTCTCAAGAACAACAACAACAACACACACCAGATCGTGCACAAGCACCTCAGTTCTCCGGCGACGAAGATGATACAAGCCAAGGAGGCGGCAGCGGTAGCGGCGGTGGCGGCGGATTCGAGCTCGGCTCTGCCTCCGGAGGCAGACGCCCCCGGGGCCGTCCGCCGGGCTCGAAGAACAAGCCGAAACCGCCGGTCATCATCACTAGAGAGAGCGCCAACACGCTAAGAGCTCACATCCTCGAAGTAGCGAGCGGTTCTGACGTCTTTGACAGCGTCGCCACCTACGCGCGGCGGCGCCAGCGCGGGATCTGCATCTTGAGCGGCAGCGGCACCGTCACCAATGTCACCATCCGGCAGCCAGCTGCGGCAGGCTCCGTCGTGACTCTCCAGGGAAGGTTCGAGATCCTGTCGCTCTCCGGCTCCTTCCTCCCGCCGCCTGCTCCGCCTGGCGCCACCAGCCTCAGCATATACCTAGCCGGCGGTCAGGGACAGGTCGTCGGAGGAAACGTAGTCGGAGAGCTGATCGCGGCGGGGCCAGTGATCGTGATCGCGTCGTCGTTCACGAACGTGGCGTACGAGCGGCTGCCGTTGGAGGAGGAGGAGCAGCAGCTGCAGATTCAGCCGCCGGGGAGTGCGGCGGGTGGAAGCCAGGGCTCCGGCGGCGTGGGTAACAACAACGCGTTTCCAGATCCTTCTTCGGGTTTGCCGTTCTTCAATTTGCCGCTTGGTATGCAAAATAACAACGTTCAGTTGCCAGTTGACGGTTACTCTTCTGGTCCACGCCCTCCGTTTTAA 894 0.604 MSMAGLDLGTASRFVQNLHRPDLHLQQQHHYQDSQEQQQQHTPDRAQAPQFSGDEDDTSQGGGSGSGGGGGFELGSASGGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGSDVFDSVATYARRRQRGICILSGSGTVTNVTIRQPAAAGSVVTLQGRFEILSLSGSFLPPPAPPGATSLSIYLAGGQGQVVGGNVVGELIAAGPVIVIASSFTNVAYERLPLEEEEQQLQIQPPGSAAGGSQGSGGVGNNNAFPDPSSGLPFFNLPLGMQNNNVQLPVDGYSSGPRPPF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151134g00001 297 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 222 IPR005175 -
Stsc151134g00001 297 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 238 - -
Stsc151134g00001 297 CDD DUF296 109 192 IPR005175 -
Stsc151134g00001 297 Gene3D - 108 242 - -
Stsc151134g00001 297 FunFam AT-hook motif nuclear-localized protein 108 235 - -
Stsc151134g00001 297 ProSiteProfiles PPC domain profile profile. 105 242 IPR005175 -
Stsc151134g00001 297 MobiDBLite consensus disorder prediction 237 263 - -
Stsc151134g00001 297 MobiDBLite consensus disorder prediction 27 98 - -
Stsc151134g00001 297 MobiDBLite consensus disorder prediction 234 263 - -
Stsc151134g00001 297 MobiDBLite consensus disorder prediction 30 65 - -
Stsc151134g00001 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 253 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151134g00001 Stsc-Chr151134 1 1509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151134g00001 3 297 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.291 3.29e-93 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151134g00001 - - pvu:PHAVU_003G230600g 326.635