Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151133g00003 ATGGGTAGGGGGAAGGTGGAGCTGAAGAGGATTGAAAACAAGATAAACAGGCAAGTGACGTTTGCAAAGAGAAGAAATGGTTTGCTGAAGAAAGCTTATGAGCTCTCTGTCCTCTGTGATGCCGAAGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCACCTCTAGCATGGCTAAGACACTTGAAAGGTACCAAAAATGCAGTTATGGAGCCTTGGAAGTACATCATCAACCTGCTGTCGAGACTCAGAGGCGCTATCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCTCTACAGAAGACTCAAAGAAATCTCCTTGGAGAAGAATTGGATAACTTAGATGTTAACGAGCTTGAACGGCTTGAGCGTCAGCTGGACTCTTCCTTGAAGCAAATTAGGTCTAACAAGGTATGCAAATTTAGTATCTGA 450 0.44 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSSMAKTLERYQKCSYGALEVHHQPAVETQRRYQEYLKLKSKVEALQKTQRNLLGEELDNLDVNELERLERQLDSSLKQIRSNKVCKFSI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151133g00003 149 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc151133g00003 149 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc151133g00003 149 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc151133g00003 149 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc151133g00003 149 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc151133g00003 149 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 142 - -
Stsc151133g00003 149 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc151133g00003 149 ProSiteProfiles K-box domain profile. 88 149 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151133g00003 149 Pfam K-box region 87 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151133g00003 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc151133g00003 149 FunFam MADS-box transcription factor 1 13 94 - -
Stsc151133g00003 149 Coils Coil 122 142 - -
Stsc151133g00003 149 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc151133g00003 149 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Stsc151133g00003 149 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151133g00003 Stsc-Chr151133 23191 34744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151133g00003 1 140 MADS-box Gene Family AT3G02310 77.857 8.02e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc151133g00003 K-box 4.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151133g00003 K09264 - gmx:100813520 243.432