Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151131g00006 ATGAAAACAATAATGTTAGGATCAAAGAAGATTTCCAATATTCTGGCTATAGATATGAATATTATTATTATTCTGTGTTTCATTCTTTTATTAACTGGATCTTTCATTAAAGAATCATCATCATCGTCAGAATTTAATGTGGAAAGCTACGAAGCTGATAGAGTAAGAGATCTTCCAGGCCAACCTTCAAGCCCATCTGTCTCACACTTTTCAGGATATATCACTGTCAATCAAGAACATGGGAGGGCCCTCTTCTATTGGTTCTTTGAAGCTCAATCTGATCCATCCAACAAGCCTCTCCTTCTCTGGCTCAATGGAGGACCTGGATGCTCCTCAATTGGGTATGGTTCTGTAGTTGAAATTGGACCTCTTTTAGTCAACAAAAATGGTGAAGGACTACAATTCAACCCATATTCATGGAATCAAGAAGCAAATTTGTTATTCGTGGAGTCCCCTGTTGGAGTTGGTTTCTCTTATACCAACACTTCCTCTGACCTCACCATATTAGAGGATAGTTTTGTAGCTGAGGATGCCTACAATTTCTTGGTAAATTGGCTACAAAGATTCCCTCAGTTCAAATCAAGGGACTTGTTTATATCAGGAGAAAGCTATGCTGGCCATTATGTCCCTCAGCTTGCAGAGCTAGTATTTGATCGAAATAAGGATAGAAACAAGTACCCTTTTATTAATATTAAAGGTTTTATTGTGGGGAATCCAGAAACTGAAGATTACTATGACTACAAAGGGCTGTTAGAATATGCATGGAGCCATGCAGTTATATCAGATGAACAATATGAGAAAGCAAAGAAAGAATGTGATTTCAAGAAAAGTGATTGGTCTAAGGAATGCAATGAGGCCATGAACATAGTGTGGAAAGCTTACTCAGAAATTGACACATACAACATTTATGCCCCAAAATGCACTCTAAATAGCAGCACTTCTTCATTATTATTAGCTGATGATGATGGAATTGAGAAAAAGAGAATGAGAATTTTTGGTGGCTATGACCCTTGCTATTCCACATATGCAGAACAATATTTCAATAAGATAGATGTTCAGTCATCTCTCCATGCTAATATTAGAGGAGGAAACACTACTAGTTTAACATGGCAGGTTTGCAGTGATTCCGTATTGAGGACATACAACTTAACTGTATTTTCGATCCTACCCATCTACACCAAACTCATCAAGGGTGGGCTTAAGATATGGGTTTACAGTGGAGATGCAGATGGAAGAGTACCTGTGATAGGGACACGGTATTGGATTGAGGCCCTTAATTTACCTCTCAAGACTAGTTGGCGTACTTGGTACCATCAAAATCAGGTGGGAGGAAGGGTAGTGGAATATGAAGGGGTGACATATGTGACAGTGAGAGGGGCAGGTCACTTGGTGCCTCTCAACAAACCCAGTGAAGCTCTCTCCCTAATTCATTCCTTCCTAACAGGGGACCATCTTCCTACTCGCTAA 1467 0.3947 MKTIMLGSKKISNILAIDMNIIIILCFILLLTGSFIKESSSSSEFNVESYEADRVRDLPGQPSSPSVSHFSGYITVNQEHGRALFYWFFEAQSDPSNKPLLLWLNGGPGCSSIGYGSVVEIGPLLVNKNGEGLQFNPYSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDSFVAEDAYNFLVNWLQRFPQFKSRDLFISGESYAGHYVPQLAELVFDRNKDRNKYPFINIKGFIVGNPETEDYYDYKGLLEYAWSHAVISDEQYEKAKKECDFKKSDWSKECNEAMNIVWKAYSEIDTYNIYAPKCTLNSSTSSLLLADDDGIEKKRMRIFGGYDPCYSTYAEQYFNKIDVQSSLHANIRGGNTTSLTWQVCSDSVLRTYNLTVFSILPIYTKLIKGGLKIWVYSGDADGRVPVIGTRYWIEALNLPLKTSWRTWYHQNQVGGRVVEYEGVTYVTVRGAGHLVPLNKPSEALSLIHSFLTGDHLPTR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151131g00006 488 ProSitePatterns Serine carboxypeptidases, serine active site. 199 206 IPR018202 GO:0004185
Stsc151131g00006 488 SUPERFAMILY alpha/beta-Hydrolases 55 483 IPR029058 -
Stsc151131g00006 488 ProSitePatterns Serine carboxypeptidases, histidine active site. 452 469 IPR033124 GO:0004185
Stsc151131g00006 488 Gene3D alpha/beta hydrolase 49 309 IPR029058 -
Stsc151131g00006 488 Gene3D - 338 377 - -
Stsc151131g00006 488 FunFam Carboxypeptidase 49 309 - -
Stsc151131g00006 488 Gene3D - 388 482 - -
Stsc151131g00006 488 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 54 469 IPR001563 GO:0004185|GO:0006508
Stsc151131g00006 488 FunFam Carboxypeptidase 388 482 - -
Stsc151131g00006 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 185 210 IPR001563 GO:0004185|GO:0006508
Stsc151131g00006 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 452 465 IPR001563 GO:0004185|GO:0006508
Stsc151131g00006 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 149 159 IPR001563 GO:0004185|GO:0006508
Stsc151131g00006 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 148 IPR001563 GO:0004185|GO:0006508
Stsc151131g00006 488 Pfam Serine carboxypeptidase 59 481 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151131g00006 Stsc-Chr151131 71788 74675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151131g00006 339 485 Calmodulin-binding Proteins AT2G22960 30.405 3.63e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151131g00006 K16297 - gmx:100792930 751.125