Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151131g00003 ATGATGGATCTTCGAAGAGGGCCATGGACGGTGGATGAAGACCTCACACTCATCAATTACATTGCCACCCATGGCGAAGGTCGCTGGAACTCCCTTGCTCGTTCTGCTGGACTCAAACGAACTGGGAAGAGTTGTAGATTGAGGTGGCTGAATTATCTTCGTCCTGATGTTCGACGTGGAAACATCACTCTTGAGGAACAACTTCTCATCCTTGAACTCCATACTCGTTGGGGAAATAGGTGGTCTAAAATTGCACAATATTTGCCTGGAAGAACTGATAACGAGATCAAGAACTACTGGAGAACTCGAGTTCAAAAACATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAGTTTAAGGACGCCATGCGTTACCTTTGGATGCCAAGGCTAGTCGAACGCATTCAAGCAGCCGCGGCCGCAACCACAACCACAGCCACCGCAACCACCACCGGCATTAATAATAATGCATATAGTTACAACAACAACAACCACCTCAATAACAATTTTGAGGTTCACAATGGGAAAATGGTGCTAACTAATACTACTACTCCTCCTTCGGTTATGAACAACAATGATTTTGTGGGTTCTTCACAAATTACCACACAAAGTTACAATACACCGGAGAATAGTAGCACAGCAGCATCATCAGATTCATTTGGGACAACTCAAGTTTCTCCGATCTCCGATTTCAATGATTATAATTACAGTGTTCCGGTTACTAGTAACAACAATATTATTAATAATCCAGGAGATAATTTCTACCAACCTTGTTCTTCTCAACAAGTTAGTTACAATAATGAGAACCCTTATTATGGATTGTTCTCTCATCAACAACAACAACAAGGAATAATGGATCTTCAAAGCATGATGATGGTGGAGCCAAACACACCTTGGATGATGCAAAGTGGGGATTCATCATCGGACAATTTTTGGAATGTTGAGAACATGTTGTTTTTGGAGCAACAACTCATGAATGACAACATGTGA 993 0.4179 MMDLRRGPWTVDEDLTLINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAATTTTATATTTGINNNAYSYNNNNHLNNNFEVHNGKMVLTNTTTPPSVMNNNDFVGSSQITTQSYNTPENSSTAASSDSFGTTQVSPISDFNDYNYSVPVTSNNNIINNPGDNFYQPCSSQQVSYNNENPYYGLFSHQQQQQGIMDLQSMMMVEPNTPWMMQSGDSSSDNFWNVENMLFLEQQLMNDNM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151131g00003 330 SMART sant 5 55 IPR001005 -
Stsc151131g00003 330 SMART sant 58 106 IPR001005 -
Stsc151131g00003 330 CDD SANT 8 53 IPR001005 -
Stsc151131g00003 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Stsc151131g00003 330 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Stsc151131g00003 330 Pfam Myb-like DNA-binding domain 6 53 IPR001005 -
Stsc151131g00003 330 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 192 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc151131g00003 330 MobiDBLite consensus disorder prediction 200 223 - -
Stsc151131g00003 330 FunFam MYB transcription factor 63 126 - -
Stsc151131g00003 330 Gene3D - 63 126 - -
Stsc151131g00003 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Stsc151131g00003 330 Gene3D - 3 59 - -
Stsc151131g00003 330 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Stsc151131g00003 330 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Stsc151131g00003 330 FunFam Myb transcription factor 6 58 - -
Stsc151131g00003 330 SUPERFAMILY Homeodomain-like 3 100 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151131g00003 Stsc-Chr151131 33390 35731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151131g00003 2 321 MYB Transcription Factor Family AT3G06490 53.963 7.13e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151131g00003 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151131g00003 K09422 - gmx:100791349 392.119