Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151130g00009 ATGCCGTTCAAGAGATTCGTCGAGATCGGAAGGGTGGCCCTCATCAACTACGGCAAGGAACACGGCAGACTTGTCGTCATCGTCGACGTCATCGACCAGAACAGAGCTCTGGTTGATGCTCCTGACATGGTTCGATCCCAAGTCAACTTCAAGAGGCTCTCGTTGACGGACCTCAAGGTTGACATCAAGAGGGTTCCGAGGANNNNNNNNNNAGCTGATGTGAAGAACAAGTGGGAGAAGAGCTCCTGGGGAAGGAAGCTGATTGTTAAGAAGACCCGGGCAAACCTGAACGACTTTGATAGGTTCAAGCTTATGCTGGTCAAAATCAAGAAGGCTGCTGTTGTTAGGCAGGAGCTTGCAAAGTTGAAGAAGGCCTCAGCTTAG 384 0.4948 MPFKRFVEIGRVALINYGKEHGRLVVIVDVIDQNRALVDAPDMVRSQVNFKRLSLTDLKVDIKRVPRXXXXADVKNKWEKSSWGRKLIVKKTRANLNDFDRFKLMLVKIKKAAVVRQELAKLKKASA 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151130g00009 127 Gene3D - 1 86 IPR014722 -
Stsc151130g00009 127 SUPERFAMILY Translation proteins SH3-like domain 5 87 IPR008991 -
Stsc151130g00009 127 CDD KOW_RPL14 7 80 IPR041985 -
Stsc151130g00009 127 Gene3D - 87 121 - -
Stsc151130g00009 127 Pfam Ribosomal protein L14 45 111 IPR002784 GO:0003735|GO:0005840|GO:0006412
Stsc151130g00009 127 PANTHER 60S RIBOSOMAL PROTEIN L14 1 125 IPR039660 GO:0003723|GO:0003735
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151130g00009 Stsc-Chr151130 32316 34577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151130g00009 1 124 Cytoplasmic Ribosomal Protein Gene Family AT4G27090 76.923 1.26e-67 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151130g00009 K02875 - gmx:100499889 211.846