Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151129g00004 ATGTTCACAATTGCACCATTGTCACAATTGCCAGCAATACCGGCTAAAGTTTCAGGCAATGGAGATGGGTCAATAATGTTGACTAAGATTGCAAAAGATGTTCCTAATGGTGTCATCATCAAAGGGCAGTGGACACCAGATGAAGACAGTGCTCTGAAGGCATTGGTGAAGGAGTATGGACCAAAGAAATGGTCTGAAATTGCTAAACATTTTAAAGGAAGAAATGGAAAACAGTGCCGTGAGAGATGGTTTGGCCATCTTCAACCAAACATTAGGAAGGGGCCATGGAGTACAGAGGAAGACATGATGCTAATCAAACTGCACAAAGAAATTGGTAACAAATGGGTAGAAATTTCAAGAAGAATGGAAGGTAGAAGTGATAACTCAATCAAGAATCATTGGAATGGAATCAAGAGAAGGAGAAGAATGAACACTCAGAATTTTAGGGCAAAGAGGTTCAACACTTATGATGTATCACTTCTTCATGCATATATCAAAGAAGTATCACCATCATTACCATCTACTACATCATCAAAGTCAAAGTCAAAGTCAACGAAGGTGGTGAAGAAGAATAGTTCCATCAACAATGATGTTGGTGATGATGATCATCCTCCATTGCTTCATAATTTTGATGAGTTGCCAATCTATGATTTCAGCGATGATTCTTGGATCACTGAGTTCTATGGCGGTGGCAGTTGCAAAGGTGATGCACCAATTAATGAAGAGTGA 729 0.3937 MFTIAPLSQLPAIPAKVSGNGDGSIMLTKIAKDVPNGVIIKGQWTPDEDSALKALVKEYGPKKWSEIAKHFKGRNGKQCRERWFGHLQPNIRKGPWSTEEDMMLIKLHKEIGNKWVEISRRMEGRSDNSIKNHWNGIKRRRRMNTQNFRAKRFNTYDVSLLHAYIKEVSPSLPSTTSSKSKSKSTKVVKKNSSINNDVGDDDHPPLLHNFDELPIYDFSDDSWITEFYGGGSCKGDAPINEE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151129g00004 242 FunFam Transcriptional activator Myb isoform A 40 93 - -
Stsc151129g00004 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 142 IPR017930 -
Stsc151129g00004 242 Gene3D - 40 92 - -
Stsc151129g00004 242 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Stsc151129g00004 242 CDD SANT 44 87 IPR001005 -
Stsc151129g00004 242 CDD SANT 95 138 IPR001005 -
Stsc151129g00004 242 MobiDBLite consensus disorder prediction 170 194 - -
Stsc151129g00004 242 ProSiteProfiles Myb-like domain profile. 41 87 IPR001005 -
Stsc151129g00004 242 MobiDBLite consensus disorder prediction 170 203 - -
Stsc151129g00004 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 91 IPR017930 -
Stsc151129g00004 242 Pfam Myb-like DNA-binding domain 44 104 - -
Stsc151129g00004 242 SUPERFAMILY Homeodomain-like 40 134 IPR009057 -
Stsc151129g00004 242 Gene3D - 95 155 - -
Stsc151129g00004 242 PANTHER MYB PROTEIN-RELATED 41 185 - -
Stsc151129g00004 242 SMART sant 40 89 IPR001005 -
Stsc151129g00004 242 SMART sant 92 140 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151129g00004 Stsc-Chr151129 42727 44074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151129g00004 32 169 MYB Transcription Factor Family AT4G18770 52.174 2.70e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151129g00004 Myb_DNA-bind_6 2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151129g00004 - K09422 ccaj:109801641 178.718