Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151129g00003 ATGCTCTCTTCAGAAACCTTAGCTCCAACTCCTCCACCATCAGAATCAAAATGTCCCTCCCAAAAACCCAATTACAACACCAACATGAATGTGCCTAACTATTTTGCTTCTGCATTTTCTACTCATGCAACCATGAATAATGCTAACTCCTCTTCCTTATCGTCCGGTAACGAGCAATACGATATTAGAGACTTTATCAACCAAAACGGAGATAGAGTTATTGTCACTTCCGCGATTCCATCAGCCAACAATTCCAATAACCAAGTGCAAATATGGGACTTTTCTAACAAAATTGTGATTACTCCGAAAACTCATTCCTCGGCGGCGGAGGTGGAGGTGGTTACAAAGAAAGATACAAAGGCTAATGCTAATGCTTATTCAGATGACAATGTTCATAGCTTGATCAAAGGGAAACAATGGACACCAGATGAGGACATGACTCTGAAGGCCTTAGTGAATGAAAATAAGCAGAAAAATTGGTCAGAAATTGCAAAATCACTTGATGGAAGGAATGCTAAGCAATGTAGAGAGAGATGGCACAATCATCTTCAGCCAAACCTCAAGAAGGGGAAATGGACCCCACAAGAAGACATGATTCTGATGAAAGCCCACATGGAAATTGGCGGGAACAAATGGGCCAAGATTTCAAAAAGATTGTCAGAGGAGAAGAACCACAAAAAAAATAAGCCCAACAATAACAACAACAACACCACCCTTGATGGCTCAAAAATGCTCAGAGCCTACATCAATGAAGTGGCTGCAGCCCAAGCAGAAGTAGCAGCATCATCCAACAAGAAGAAGAAGGGCAAGGCCACGATGTTCAATGGGATTAAAATTGATCTCAATCTTCCCTTGGACTTTCCAAGTGATGAAGACATCCTCATGAATATGGCAACCAACTAG 903 0.4153 MLSSETLAPTPPPSESKCPSQKPNYNTNMNVPNYFASAFSTHATMNNANSSSLSSGNEQYDIRDFINQNGDRVIVTSAIPSANNSNNQVQIWDFSNKIVITPKTHSSAAEVEVVTKKDTKANANAYSDDNVHSLIKGKQWTPDEDMTLKALVNENKQKNWSEIAKSLDGRNAKQCRERWHNHLQPNLKKGKWTPQEDMILMKAHMEIGGNKWAKISKRLSEEKNHKKNKPNNNNNNTTLDGSKMLRAYINEVAAAQAEVAASSNKKKKGKATMFNGIKIDLNLPLDFPSDEDILMNMATN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151129g00003 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 219 IPR017930 -
Stsc151129g00003 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 187 IPR017930 -
Stsc151129g00003 300 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 135 220 - -
Stsc151129g00003 300 FunFam Transcriptional activator Myb isoform A 135 188 - -
Stsc151129g00003 300 Gene3D - 188 240 - -
Stsc151129g00003 300 SUPERFAMILY Homeodomain-like 139 215 IPR009057 -
Stsc151129g00003 300 SMART sant 188 230 IPR001005 -
Stsc151129g00003 300 SMART sant 136 185 IPR001005 -
Stsc151129g00003 300 ProSiteProfiles Myb-like domain profile. 132 183 IPR001005 -
Stsc151129g00003 300 CDD SANT 191 219 IPR001005 -
Stsc151129g00003 300 CDD SANT 140 183 IPR001005 -
Stsc151129g00003 300 Pfam Myb-like DNA-binding domain 140 197 - -
Stsc151129g00003 300 Gene3D - 138 187 - -
Stsc151129g00003 300 ProSiteProfiles Myb-like domain profile. 184 229 IPR001005 -
Stsc151129g00003 300 MobiDBLite consensus disorder prediction 1 25 - -
Stsc151129g00003 300 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151129g00003 Stsc-Chr151129 28638 30538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151129g00003 134 219 MYB Transcription Factor Family AT5G40360 54.651 1.76e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151129g00003 Myb_DNA-bind_6 7.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151129g00003 K09422 - aip:110263065 213.001