Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151129g00002 ATGGCTGCCACAGCAACTGCCTCTTCAGTTGGTCCGCGGTATGCACCACCCGACCCTACGTTACCAAAACCATGGCGGGGTCTTGTAGATGGAAAGACTGGATATCTTTATTTTTGGAATCCTGAAACTAATGTCACCCAATACGAGCGGCCTTCAAGCTCAGCTGCCCCACCTAAATATTCTTCTTCGGTGCCAAGTTCCTCTGTCCAGGTTCAACAATCATCTCAAGGGCAGCAGCGTGGTCGCAGTCCTGAGTTGAGTGATAGGTATGAGAGAAACAGTGGAGGAGTGTCAAATAATGAAGCTGGATCGCGCAACTACCAGGATTCAAAAGGTGGAAATATTAGTTCTCATAATGCTCCGAATGGGATGCATTCTGCTGGAAATGTTAGTTCCTCTGTAAGAGGTCAAGGAGCATCAGATACTGGAGCTGGGTTATCTCCAGAGGCTTATCGGCGTCGACATGAAATTACTGTTACTGGTGACGATGTTCCTCCTCCACTTACATCATTTAGTTCAAGTGGTCTTCCATCTGAGATTCTTAGAGAGTGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGAGACATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGCCGTTTGAATGATATACTTGAGATGAGAAGAATCACTCTTAACCAGATTTCTTATCTTGTGCTGGACGAGGCAGACAGGATGCTGGACATGGGCTTTGAACCTCAAATTAGAAAGATTGTAAATGAGGTGCCTGCTCGTAGGCAAACTCTTATGTATACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTTCAGGTGAACATTGGGAATGTAGATGAGCTTGTTGCCAACAAATCTATTACTCAGCATGTTGAAGTATTGTCCTCAATGGAGAAACAGAGAAGACTGGAAAATATTTTGCGGTCACAGGATCAAGGTTCAAAAATAATTATTTTTTGTTCTACGAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGAGCTGCTGCTATTCATGGGGATAAATCCCAGTCTGAGAGGGACCATGTCTTGAATCAATTTCGAACTGGGAGGTCTCCTGTCCTTGTTGCTACAGATGTTGCAGCTCGAGGACTAGACATCAAAGACATCAGGGTGGTCGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGGAGGACCGGGAGGGCTGGGGCCACTGGTTTAGCATACACTTTTTTTGGGGAGCAGGATGCTAAACATGCTACAGACCTCATCAAAGTCTTGGAAGGTGCAAACCAGAAAGTTCCTCCTGAACTTCGGGATATGTCGTCACGGGGTGGTGGGATGAATAGATCCAGACGATGGGGTTCTTCTGGTTCTGGTCGCGGGGGACGCGGTGACTCTGGATACGGTGGAAGGGGTAGTGATTCTGGATATGGTGGTAGGGGTAGTGATTCTGGATACGGTGGAAGGGGTGGTGATGGCGGATATGGTAGCAGAGGGGGCGACTCTAGTTATGGTGGAAAGGGTGGGTGGTCTGCTTCTGGCAGAGGTGGAGGACGTGGGTCAGACTATGATTCACAGAGGAATGATCGTGCTCGGAGTCCTGACAGAGGATCTAGTTGGAGTGATCGCTTCAAAAACCGTGATCGCAGCCGCAGCCGCAGTCGTAGCCCTGTCAGGTCACATGTCAGCTTTCACAAAGCAATGATGGAACGTAGTGGTGGTGGTGACAGTGATCGCAAGAGTTTTAATCGGGACCGAAGCCGCAGTCCTGTCCCCTATAACAAGGACCGGGCTCCTGCAGCTCGTGAGCGTTCCCCCCCTTATAGTTTTCATCGCTCAGTTATGGGACAAGGTCGATCATCTTCCCCATCTCGACAGCAGCATGCAGAGGAAAAAGTAGGAAGACGCAGTCCTAATAGAAACTCACCATCCTCTCCTGGTGGTGGTAGATCCAACAATGGTGCTCAAAAGGAGTGGGGAAGGTCTCATGGTGACGGGAAGTATGGTGGATCTTCCTATAATGGAGAAGAGGAGGAAGGTATGATACCTGATGAAGAAGGTATGATAGGTCAAGATGATGGTGTATATCAAAATGCAGACTAA 2151 0.4788 MAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKYSSSVPSSSVQVQQSSQGQQRGRSPELSDRYERNSGGVSNNEAGSRNYQDSKGGNISSHNAPNGMHSAGNVSSSVRGQGASDTGAGLSPEAYRRRHEITVTGDDVPPPLTSFSSSGLPSEILRECLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRITLNQISYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLSSMEKQRRLENILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGEQDAKHATDLIKVLEGANQKVPPELRDMSSRGGGMNRSRRWGSSGSGRGGRGDSGYGGRGSDSGYGGRGSDSGYGGRGGDGGYGSRGGDSSYGGKGGWSASGRGGGRGSDYDSQRNDRARSPDRGSSWSDRFKNRDRSRSRSRSPVRSHVSFHKAMMERSGGGDSDRKSFNRDRSRSPVPYNKDRAPAARERSPPYSFHRSVMGQGRSSSPSRQQHAEEKVGRRSPNRNSPSSPGGGRSNNGAQKEWGRSHGDGKYGGSSYNGEEEEGMIPDEEGMIGQDDGVYQNAD 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151129g00002 716 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 284 IPR014001 -
Stsc151129g00002 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 434 IPR027417 -
Stsc151129g00002 716 SMART helicmild6 338 418 IPR001650 -
Stsc151129g00002 716 Gene3D - 182 288 IPR027417 -
Stsc151129g00002 716 MobiDBLite consensus disorder prediction 48 83 - -
Stsc151129g00002 716 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 180 457 - -
Stsc151129g00002 716 SMART ww_5 20 53 IPR001202 GO:0005515
Stsc151129g00002 716 Pfam DEAD/DEAH box helicase 181 273 IPR011545 GO:0003676|GO:0005524
Stsc151129g00002 716 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
Stsc151129g00002 716 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Stsc151129g00002 716 CDD WW 22 51 IPR001202 GO:0005515
Stsc151129g00002 716 Gene3D - 11 58 - -
Stsc151129g00002 716 CDD SF2_C_DEAD 298 427 - -
Stsc151129g00002 716 MobiDBLite consensus disorder prediction 48 150 - -
Stsc151129g00002 716 MobiDBLite consensus disorder prediction 654 674 - -
Stsc151129g00002 716 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 230 238 IPR000629 -
Stsc151129g00002 716 MobiDBLite consensus disorder prediction 1 27 - -
Stsc151129g00002 716 Pfam Helicase conserved C-terminal domain 310 418 IPR001650 -
Stsc151129g00002 716 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 457 IPR001650 -
Stsc151129g00002 716 MobiDBLite consensus disorder prediction 538 571 - -
Stsc151129g00002 716 MobiDBLite consensus disorder prediction 587 618 - -
Stsc151129g00002 716 SMART ultradead3 13 301 IPR014001 -
Stsc151129g00002 716 Gene3D - 289 459 IPR027417 -
Stsc151129g00002 716 FunFam ATP-dependent RNA helicase RhlB 288 460 - -
Stsc151129g00002 716 MobiDBLite consensus disorder prediction 92 140 - -
Stsc151129g00002 716 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Stsc151129g00002 716 MobiDBLite consensus disorder prediction 449 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151129g00002 Stsc-Chr151129 22968 27670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151129g00002 170 456 Eukaryotic Initiation Factors Gene Family AT3G19760 32.646 3.50e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151129g00002 K12823 - gmx:100816455 509.605