Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151128g00016 ATGACAAACAATCCTTACTACTGCTCCAATGGTTATTGGTTCGACCTTAATTCTCCCACTACCTCCTACCTTTTTTCTTCTTCTAATAATAATAACAATAATAATAACCAACACCACCAGCAGCAGCAGCAAATATCATGGTCTCCGCCAAGAAGAGAAGCTCTTCCTCTGCTTAACAACCTAAGCCCTACTACCAGGAATAGGCCTCATCAAGAAGATCTGGAATCTTCCTTTGGTGCCATGGAAGTGAAGGAGAATCAGGACAATAAACAACAACAACCACTGAGTATATCATTATCATGTAGCTCCATGGATGATGAGGAGAGTGTGACGGTGGCTTTGCACTTAGGGCTTCCATCATCAGGAACAACAACAAGATGTGAAGATGTGTCAGTAGTATCAGTATCACAAGAACAAGAAGAAGGAATCGGAGGAGGAGGAATAGGTTCTTCATCTTCAGCAGAATATGGATCATCAAATAGCAGCAGATCAATGATGATGAATAGAGGTCAGTATTGGATCCCAACACCAGCTCAGATTCTGATTGGTCCAACTCAATTCTCTTGCCCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGGAAGGGGCCAGAATCTCTAAGAGGAACTCAACCAACAGCAATGCTTAGGCTTCCATGCTATTGCTGTGCACCAGGTTGCAAGAACAACATTGATCATCCAAGAGCCAAGCCTCTCAAAGATTTCAGAACCCTCCAAACACACTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGCAGGAAATGCTGCAAGGCTTTTGCTGTTAGAGGTGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTGTGGTATTGTTCTTGTGGATCTGATTTCAAGCATAAGAGGTCTCTCAAGGATCATATCAAGGCCTTTGGGAATGCTCACAGGGCTTATGGGATTGATTCTCTTGATCATGATGATAATGAAGAACCTGATGGCTCTGAGATTGACCAAGAAAATGATCTTTCTAATTCTACTACTCCTCATCATAATACTTAA 1080 0.4241 MTNNPYYCSNGYWFDLNSPTTSYLFSSSNNNNNNNNQHHQQQQQISWSPPRREALPLLNNLSPTTRNRPHQEDLESSFGAMEVKENQDNKQQQPLSISLSCSSMDDEESVTVALHLGLPSSGTTTRCEDVSVVSVSQEQEEGIGGGGIGSSSSAEYGSSNSSRSMMMNRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNAHRAYGIDSLDHDDNEEPDGSEIDQENDLSNSTTPHHNT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151128g00016 359 Gene3D Classic Zinc Finger 249 325 - -
Stsc151128g00016 359 MobiDBLite consensus disorder prediction 329 359 - -
Stsc151128g00016 359 Gene3D Classic Zinc Finger 186 209 - -
Stsc151128g00016 359 MobiDBLite consensus disorder prediction 345 359 - -
Stsc151128g00016 359 MobiDBLite consensus disorder prediction 137 161 - -
Stsc151128g00016 359 MobiDBLite consensus disorder prediction 25 48 - -
Stsc151128g00016 359 FunFam Zinc finger protein WIP2 240 322 - -
Stsc151128g00016 359 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Stsc151128g00016 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Stsc151128g00016 359 SUPERFAMILY beta-beta-alpha zinc fingers 253 291 IPR036236 -
Stsc151128g00016 359 PANTHER ZINC FINGER PROTEIN WIP2 26 347 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151128g00016 Stsc-Chr151128 96590 98402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151128g00016 110 348 C2H2 Transcription Factor Family AT3G57670 68.217 5.19e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151128g00016 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151128g00016 - - gmx:100789416 434.106