Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151128g00013 ATGGACCATGACAAGACTGGATGCCAAGCTCCACCAGAAGGTCCTATACTGTGCATTAACAACTGTGGATTTTTTGGGAGTCCGGCAACCATGAACATGTGTTCCAAGTGCCACAAGGACATGATGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCTTCCATAGGAAATATTATGAATGGGTCATCAAGCAGCGGCGGAAATGAACCTGTTATTGCCGCCAATGTGGATATTCCAGTCAATTCAACAGAGCCAAAAGCTATCTCAACGCAACCTTTATCTNNNNNNNNNNAGAGTGGTGAGGCAAAGCCCAAGGACGGTCCAAAACGTTGCAGCAGCTGCAATAAGAGGGTTGGTTTGACAGGATTTAATTGTCGATGTGGTAACCTTTACTGTGCTGTACATCGCTACTCAGACAAGCATGACTGCCCGTATGATTACCGTACTGCTGCACGGGATGCTATTGCGAAAGCAAACCCAGTTGTGAAGGCTGAGAAGCTTGATAAAATCTAG 513 0.4581 MDHDKTGCQAPPEGPILCINNCGFFGSPATMNMCSKCHKDMMLKQEQAKLAASSIGNIMNGSSSSGGNEPVIAANVDIPVNSTEPKAISTQPLSXXXXSGEAKPKDGPKRCSSCNKRVGLTGFNCRCGNLYCAVHRYSDKHDCPYDYRTAARDAIAKANPVVKAEKLDKI 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151128g00013 170 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Stsc151128g00013 170 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Stsc151128g00013 170 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 170 - -
Stsc151128g00013 170 Gene3D - 4 65 - -
Stsc151128g00013 170 Gene3D - 86 166 IPR035896 -
Stsc151128g00013 170 ProSiteProfiles Zinc finger AN1-type profile. 105 151 IPR000058 GO:0008270
Stsc151128g00013 170 FunFam Zinc finger AN1-type containing 6 84 166 - -
Stsc151128g00013 170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Stsc151128g00013 170 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Stsc151128g00013 170 SMART AN1_Zf_4 111 148 IPR000058 GO:0008270
Stsc151128g00013 170 MobiDBLite consensus disorder prediction 84 106 - -
Stsc151128g00013 170 SUPERFAMILY AN1-like Zinc finger 101 165 IPR035896 -
Stsc151128g00013 170 Pfam AN1-like Zinc finger 111 147 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151128g00013 Stsc-Chr151128 71721 73890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151128g00013 8 170 C2H2 Transcription Factor Family AT3G52800 43.860 4.81e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151128g00013 - - qsa:O6P43_000126 294.278