Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151128g00011 ATGGGGTCAATGAATTCAAACAACTGGCTATCATTTCCACTGTCTCCAACTCATTCATCATTGCCGCCTCATCATCAGTTTTCTCTGGGAACATTGGTGAATGACAACATCGATAACTCCTTTCAAAACCATGATTGGAATCTGCTAAACAGTCACAGCAGCAGCAGCCAGATACCAAAGGTAGCAGATTTTCTTGGTGTGAGTAGCAACAAGTCTGAGAACGAGTCAGATCTTGCAGGAGGGTTCAATGATGAGTCGGATTATTTGTTCAACACAAACACTGCTGCTGCTGCTACTACTACCCTTGTGCCTCTGCAAGTTGCTACTTCTAATGATGATAGCAGCTATGAGTACCAACAAGAGAGTAACAGCAACAACAGTCTTCAGGCACTGACACTCTCCATGGCTAGCGGGGCTGCTAACAAGGACTCAACTTCCGAAACAACCGCAGACAACTCTTCAACTGCCACTGCCCTTGTTGAAGCTTCACCTACTGCTGCTGCCCCTAGAAGAACTTTGGATACCTTTGGTCAGAGAACTTCCATTTATCGTGGTGTAACAAGACATAGATGGACTGGGAGGTATGAAGCTCATCTATGGGATAATAGTTGTAGAAGGGAGGGTCAATCAAGAAAAGGACGCCAAGGTGGGTATGACAAAGAAGAGAAAGCTGCAAGGGCTTATGATTTAGCTGCACTTAAATACTGGGGAACTTCCACCACCACCAACTTCCCCATGAGTAACTACGAGAAAGAGTTGGAAGACATGAAGCACATGACAAGACAGGAATTCGTTGCAGCCATTAGAAGAAAGAGCAGTGGATTTTCGAGGGGAGCATCAATGTATCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATAGGGAGAGTGGCCGGGAACAAAGACCTGTACCTGGGAACATTCAGTACAGAAGAAGAAGCTGCAGAAGCCTACGACATTGCAGCCATAAAGTTCAGAGGCTTAAACGCAGTAACAAACTTCGACATGAGCCGCTACGATGTCAAAGCCATTCTTGAAAGCAACACACTCCCCATTGGAGGAGGCGCTGCGAAACGCTTAAAGGAAGCTCAGGCTCTCGAATCTTCTAGAAAGACCAGGGACGACATCATTGCGTTAGGAAGTTCCACTTTTCAATATCCTGGAGGAGGATCATCATCATCCTCATCAACTTACCCTCTAATGCCTCATCATCATCATCATCAACCATTGCTAACCTTACAGAACCACTATGACATGTCACACTACAGCAACGTTAACGATGCTGCTTCTTCTTTTCATCATCACAATTCTTATCTGCAAACGCAGCTTCAACTCCATCATCATCATCAACACCAATCCGCTTCTTCTTCTTCTTCTTACAATAATAATAATGTCCAATTTTACAACAGCTACCTTCAGGGATTGATGGACAATAACAATGGAGGCGACGGCGGCGGCGGAGGAGGAGGAGGTTATCATCACCATCATCATAATCATAACCATCAGAATCAAACAAATAACATGATTGGGATTGGAATGGGTTCTAATAATAACTCCACATCGAGCAATGCCACTGCAGTGGGATCAGCGGAGGAGCTTGCTCTTGTGAAGGTTGATTATGACATGCCTTCCGCGGGATACGGCGGGTGGTCGCCGGCGGCGGACGCCATGCACGGTGGTTCAAACGGTGGTAGTGGTGGTGGTGTGTTCACAATGTGGAATGAATGA 1740 0.4603 MGSMNSNNWLSFPLSPTHSSLPPHHQFSLGTLVNDNIDNSFQNHDWNLLNSHSSSSQIPKVADFLGVSSNKSENESDLAGGFNDESDYLFNTNTAAAATTTLVPLQVATSNDDSSYEYQQESNSNNSLQALTLSMASGAANKDSTSETTADNSSTATALVEASPTAAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPMSNYEKELEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKTRDDIIALGSSTFQYPGGGSSSSSSTYPLMPHHHHHQPLLTLQNHYDMSHYSNVNDAASSFHHHNSYLQTQLQLHHHHQHQSASSSSSYNNNNVQFYNSYLQGLMDNNNGGDGGGGGGGGYHHHHHNHNHQNQTNNMIGIGMGSNNNSTSSNATAVGSAEELALVKVDYDMPSAGYGGWSPAADAMHGGSNGGSGGGVFTMWNE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151128g00011 579 CDD AP2 280 341 IPR001471 GO:0003700|GO:0006355
Stsc151128g00011 579 SMART rav1_2 281 345 IPR001471 GO:0003700|GO:0006355
Stsc151128g00011 579 SMART rav1_2 182 251 IPR001471 GO:0003700|GO:0006355
Stsc151128g00011 579 ProSiteProfiles AP2/ERF domain profile. 281 339 IPR001471 GO:0003700|GO:0006355
Stsc151128g00011 579 FunFam AP2-like ethylene-responsive transcription factor 280 341 - -
Stsc151128g00011 579 PRINTS Ethylene responsive element binding protein signature 321 341 IPR001471 GO:0003700|GO:0006355
Stsc151128g00011 579 PRINTS Ethylene responsive element binding protein signature 183 194 IPR001471 GO:0003700|GO:0006355
Stsc151128g00011 579 CDD AP2 181 247 IPR001471 GO:0003700|GO:0006355
Stsc151128g00011 579 Gene3D AP2/ERF domain 281 341 IPR036955 GO:0003700|GO:0006355
Stsc151128g00011 579 Gene3D AP2/ERF domain 182 247 IPR036955 GO:0003700|GO:0006355
Stsc151128g00011 579 MobiDBLite consensus disorder prediction 483 509 - -
Stsc151128g00011 579 SUPERFAMILY DNA-binding domain 280 341 IPR016177 GO:0003677
Stsc151128g00011 579 ProSiteProfiles AP2/ERF domain profile. 182 245 IPR001471 GO:0003700|GO:0006355
Stsc151128g00011 579 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 55 445 - -
Stsc151128g00011 579 MobiDBLite consensus disorder prediction 138 173 - -
Stsc151128g00011 579 FunFam AP2-like ethylene-responsive transcription factor ANT 181 247 - -
Stsc151128g00011 579 Pfam AP2 domain 182 237 IPR001471 GO:0003700|GO:0006355
Stsc151128g00011 579 Pfam AP2 domain 282 331 IPR001471 GO:0003700|GO:0006355
Stsc151128g00011 579 SUPERFAMILY DNA-binding domain 181 247 IPR016177 GO:0003677
Stsc151128g00011 579 MobiDBLite consensus disorder prediction 138 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151128g00011 Stsc-Chr151128 66502 69215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151128g00011 4 579 AP2-EREBP Transcription Factor Family AT1G51190 59.040 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc151128g00011 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151128g00011 K09285 - gmx:100170752 650.973