Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151128g00007 ATGGAGTCAGATCTTGAGGCAGCGAGTTCGAACGGGTTAACTCGGTACCGATCGGCACCGAGTTCATACTTCACGGACATAATTGACCGGGAATTCTACGAGCACATATTCAACCGTCCTTCAAGCCCTGAAACAGAGCGAGTCTTCTCCAAGTTCATGAATACTCTCCGTGACGACGATTCTTCTTCGCTCCATCTCAAGGAAGAAGATGGTATCACTCCCTCTCAACCTCTTCTCTTTCAACACCACCACAACCAGCAGAACAACATCAACAACTTTAACTATCAAAGCACCGCGAAACCGCCCCTGCCGAATCAGAATCAGAATCTTGCTTCCTCCGCTGGTGTGGAAGGAGTGTTTTCTGATAATAATAACAATAATAATCGGTTGCCGCAGATGAAGAATCATTCTAATCTTGTTAGGCACAGTAGCTCACCTGCTGGACTATTCTCCCAAATTCACATTGAAAACGGGTATGTTGTTGATATGCGGGGGATGGGGACTAAGAGTGTGGAAGAAGTGAAGTTCTCTACTACTTCAAGGACAAGGAGGTTCAAGAATCCACAGAACTACTCTTCTTCCTCTTCCACTGGGAGAATGTCCTCAATTGCTGAGATTGGCAACAGGGACAACAGAGAAGACAATCCAGATGCTGAAGCTTTTGGTGAAACTACTCACGGTGACGATTTCATCTCGGAGTTTGCGCCCTGGGATGATGCCGTCCCCGTGAATGACATGGTTGGTGGTCCAAAAAGATTCAGAGATGATGATGATGTCAAGCCATTTTCTTCTGCTTTGAATAATGCAGCTGACACTCAGAAAGAAAGTAGAGGACAGCAAGGTGCTCCTTTGGCTCATCAAATGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTCTTGCAGTTTTCAGATTCTGTTCCCTGCAAAATCCGTGCCAAGAGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACCAAAATCAGTGAGCGTATGAGGAAACTACAAGATCTGGTGCCTAACATGGACAAGCAAACAAACACAGCAGACATGCTGGATTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGTGGAGACGCTTTCAGACTGCCAAGCTAAGTGTACGTGTTCTTCCAAGCCACAGCAATAA 1179 0.4589 MESDLEAASSNGLTRYRSAPSSYFTDIIDREFYEHIFNRPSSPETERVFSKFMNTLRDDDSSSLHLKEEDGITPSQPLLFQHHHNQQNNINNFNYQSTAKPPLPNQNQNLASSAGVEGVFSDNNNNNNRLPQMKNHSNLVRHSSSPAGLFSQIHIENGYVVDMRGMGTKSVEEVKFSTTSRTRRFKNPQNYSSSSSTGRMSSIAEIGNRDNREDNPDAEAFGETTHGDDFISEFAPWDDAVPVNDMVGGPKRFRDDDDVKPFSSALNNAADTQKESRGQQGAPLAHQMSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLSDCQAKCTCSSKPQQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151128g00007 392 Gene3D - 321 389 IPR036638 GO:0046983
Stsc151128g00007 392 MobiDBLite consensus disorder prediction 181 200 - -
Stsc151128g00007 392 MobiDBLite consensus disorder prediction 205 224 - -
Stsc151128g00007 392 MobiDBLite consensus disorder prediction 265 284 - -
Stsc151128g00007 392 FunFam Transcription factor bHLH130 family 321 389 - -
Stsc151128g00007 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 370 IPR011598 GO:0046983
Stsc151128g00007 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 382 IPR036638 GO:0046983
Stsc151128g00007 392 MobiDBLite consensus disorder prediction 206 224 - -
Stsc151128g00007 392 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 76 385 - -
Stsc151128g00007 392 SMART finulus 326 376 IPR011598 GO:0046983
Stsc151128g00007 392 MobiDBLite consensus disorder prediction 179 200 - -
Stsc151128g00007 392 MobiDBLite consensus disorder prediction 249 284 - -
Stsc151128g00007 392 Pfam Helix-loop-helix DNA-binding domain 325 371 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151128g00007 Stsc-Chr151128 25862 28744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151128g00007 11 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.313 5.71e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151128g00007 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151128g00007 - - gmx:100805812 451.44