Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151126g00018 ATGGAATCTCCAAATCTCCATCATCAACATCAACACCCTCCTCCTCCTTCTTCTTCTTCCTCATCATCGTCATATGGATCCACCACCCACCACTCTTGGCCTCCAAATAATAATATCACTTTTAGTCATATCCAAGAGGATATTAATAATAATCTGAGATGGAGAGGAGGTACTTTAAGAGATCATTATCATCATGTTGGGGTCCCTCTGATCCAAGATCATCACTTATGTAGTAGTGATGATAATTCTGCACAACAAAGTTGCTTAACCTTAAACACCACCAACAACCACATGCTAAACTCTCACACACATACACATACACCTCCTTCAACACAACAAGATAAGCTCTTGCTCAAGACATTTTTGTCTGCACAAGATTTGATCGATTCCAATAACATTACTACTACTACTTTCTGTGGTAGTAGTAGAAGAAATTTTAGTCACATTTATCCCACCATAAATATCTCTAATAACATGAACAACCACTCACCATCATCATCTCCTAATAATAATATGATGATGATGATGACTTCACACTCCTCCTTGGATCTACCAGCTTTCATGACTACTGCTTCACATCATCAACAAGTAGATCTTGGTCTTGCTACATTTTCAGACAACCTTTCTTTCTCGCCGCCGCCGCCCTGTAGTAACTCTACTACTACTACTAATAAGGATCCATCACAATACTTCTCCAATGGCACTACTACTATTGTGGACACAACAAAGAGACCCTGCACTTCCATCATCGATGATACAAAGCCTTCTCAGTCTCTAACAGCATCCAAGAAATCAAGATCCGAATCACGCCCCTCATGCCCTCCCTTTAAGGTTAGGAAAGAGAAATTAGGAGATAGGATTGCGGCTCTCCAACAGTTGGTGGCTCCTTTTGGTAAGACAGACACTGCATCCGTACTTATGGAAGCAATTGGATACATCAAATTCCTTCAAAGCCAAGTAGAGACACTGAGCGTTCCATACATGAAGCCATCACAGAACCAAACCAAGACCAGAATCATGCAAGGGGCATAG 1032 0.4099 MESPNLHHQHQHPPPPSSSSSSSSYGSTTHHSWPPNNNITFSHIQEDINNNLRWRGGTLRDHYHHVGVPLIQDHHLCSSDDNSAQQSCLTLNTTNNHMLNSHTHTHTPPSTQQDKLLLKTFLSAQDLIDSNNITTTTFCGSSRRNFSHIYPTINISNNMNNHSPSSSPNNNMMMMMTSHSSLDLPAFMTTASHHQQVDLGLATFSDNLSFSPPPPCSNSTTTTNKDPSQYFSNGTTTIVDTTKRPCTSIIDDTKPSQSLTASKKSRSESRPSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQSQVETLSVPYMKPSQNQTKTRIMQGA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151126g00018 343 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 81 331 - -
Stsc151126g00018 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
Stsc151126g00018 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 332 IPR036638 GO:0046983
Stsc151126g00018 343 CDD bHLH_AtbHLH_like 274 324 IPR045239 -
Stsc151126g00018 343 MobiDBLite consensus disorder prediction 210 277 - -
Stsc151126g00018 343 MobiDBLite consensus disorder prediction 1 38 - -
Stsc151126g00018 343 FunFam Transcription factor bHLH123 family 277 339 - -
Stsc151126g00018 343 Gene3D - 277 340 IPR036638 GO:0046983
Stsc151126g00018 343 MobiDBLite consensus disorder prediction 210 269 - -
Stsc151126g00018 343 MobiDBLite consensus disorder prediction 12 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151126g00018 Stsc-Chr151126 78498 82201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151126g00018 143 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 46.364 3.28e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151126g00018 - - aip:107610095 355.525