Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151126g00009 ATGGAACCTCATCATGCACTAGCAGCAGCAGCTTCTGGCTCTGAGATGAGCCACACAAGGCATTTGATGGATCTTCTTGGAGCAGCGGCTAATGACAGCAATCATCATCATCACCAACAACAACATCCTCAACAAGCTCTCTCTCTTTCCTTAGGCTCTCACATGATTGTTCCTTCTCAAGATGAATATGGTAGGCATAACAGTAGTAGATCCTTCATTCATGGTTTCATGAACCCCAATAGTTACTTCATCCCTGGTCAAGATTCAAGGGCAGTGGAGAATCTAGCTAGTGACTACTACTTCAACAACAACAATGCCACCACCACTTTTGCTTCATCTTCTGCATCTTTTGGGAGTGGCCAAGAGTCTTTTGCTGCTCTCATTGGGAACTCTAGGTACCTCAAACCAGTACAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAACCGTGGTTGATAGAATGAATGACAAGTATGTGGAGAAGTTGTTCCGTGGTGGCAGGAACACTTCAAGGACACTCTCCTCACAGTTGAATGGTAGTGTCTTGTCAGCTGAAAAACAAGAACATCAGATCAAGATTGCAAAGTTGATTTCTTTGCTGGAAGAGGTAGAAGGGAGGTATGAGAAATACTACCATCAAATGGAAGAAGTAGTGGCAACGTTTGAGATGATAGCAGGTGAAGGAGCAGCAAAATGTTACACAGCATTGGCATTACAAGCCATGGGAAGGCACTTCTGCAACCTGAGAGATGCAATAATGTCACAGATAAACTCTGAGAAGAAGAAACTGATGCAAGATTTGCCTAAACTCAACACTGGCTTGTCTCGGTTAAGCCTTTTTGACAGAGACACAAGACAAAACAGAATGTCTCTCCAACAACTTGGGATGATCCAAAGTCAACGCAGCAGTCAATATGTTTGGAGACCCATCAGAGGCTTGCCTGAAACCTCTGTTGCAATTCTACGTTCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCGAATGATTCTGAGAAGTTAATGTTGGCGTCACAGACAGGTTTAACTAAAAACCAAGTGTCCAATTGGTTCATAAATGCAAGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTACGAACAAGAGTTTGGAGACTCTTCAGAAGACTCCAACCCGCAAACTACTAACTTCACCACCACCGAAGATGCCACCACGCACTGCCACCATCACGATTCAACTTAA 1227 0.4385 MEPHHALAAAASGSEMSHTRHLMDLLGAAANDSNHHHHQQQHPQQALSLSLGSHMIVPSQDEYGRHNSSRSFIHGFMNPNSYFIPGQDSRAVENLASDYYFNNNNATTTFASSSASFGSGQESFAALIGNSRYLKPVQSLLEDLVDVGGTVVDRMNDKYVEKLFRGGRNTSRTLSSQLNGSVLSAEKQEHQIKIAKLISLLEEVEGRYEKYYHQMEEVVATFEMIAGEGAAKCYTALALQAMGRHFCNLRDAIMSQINSEKKKLMQDLPKLNTGLSRLSLFDRDTRQNRMSLQQLGMIQSQRSSQYVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYEQEFGDSSEDSNPQTTNFTTTEDATTHCHHHDST 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151126g00009 408 ProSiteProfiles 'Homeobox' domain profile. 327 368 IPR001356 GO:0003677
Stsc151126g00009 408 MobiDBLite consensus disorder prediction 380 397 - -
Stsc151126g00009 408 CDD homeodomain 308 369 IPR001356 GO:0003677
Stsc151126g00009 408 SMART prehox3 122 255 IPR006563 -
Stsc151126g00009 408 Pfam Homeobox KN domain 325 364 IPR008422 GO:0003677|GO:0006355
Stsc151126g00009 408 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 386 - -
Stsc151126g00009 408 MobiDBLite consensus disorder prediction 378 408 - -
Stsc151126g00009 408 Pfam Associated with HOX 128 254 IPR006563 -
Stsc151126g00009 408 Coils Coil 187 207 - -
Stsc151126g00009 408 SUPERFAMILY Homeodomain-like 314 377 IPR009057 -
Stsc151126g00009 408 Gene3D - 305 383 - -
Stsc151126g00009 408 SMART HOX_1 308 372 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151126g00009 Stsc-Chr151126 40383 42014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151126g00009 102 396 Homeobox Transcription Factor Family AT2G16400 47.213 4.55e-81 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc151126g00009 POX 8.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151126g00009 - - gmx:100807944 516.538