Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151126g00008 ATGTATCCCAATCAAGCATTCTCTGCAGGATCCTATGCAGAGATGTTGTCTGGTGGGACTGGGAATAATCCTTTATTGTCTCATAATATGGTTGATCATCCAGCATGCAATTCTTTTGTAGAAGGTGAACAAAATTCACAACAGTTCCAAGGCTTATCTCTTAGCCTAGGTACATCTGTTCCTTCCTTTCAATACCACTATCCTGGAGCTGCTACTACTACTACTGCTGCTGCTGAATGCATGGTGTCTTTATCTTCTGGAGGGTATCATGAGAGTAGTGCTAAAAGAGAGGGTTTATTATACAATTCCAATAACTCATGCCTTCAGGGATCATCATTCTCATCAAATGGTGTCATGAACTCACACTATCTTAAGGCAGCACAGGAGTTACTTGATGAAATAGTTGGTGTCCGAAAGGCTTTGTTGAAGGACAAACAAGAAAAGTTCAATAACATTGATGGCTCCAAGGATTCTGATGGAAAATGTAACACTCAATCATCACTGCAAAATAATAATAATGCAAAATCTCCTAATGAACTATCAGCTGAAGAACGCCAGAGTTTCTTGGAAAAGAAGACAAAGCTTTTGGCCTTGTTGGATGAGGTGGACAAGAAATACAGACAGTACTGTCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCTGGATGTGGAGCTGCTGAGCCTTACACATGGCTAGCATTGAGGACCATATCTCGCCATTTTCGGAGCTTGCGCGATGCAATCAGTGGACAAATTCAAGTGATACAGAGGTGCCTTGGGGAGCAAGAAGGGATACCGCGTCTTCGTTATGTTGATCAGCAGCTTAGACAGCAAAAAGCACTTCAGCAACTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGTCTCCCTGAAACCTCTGTCTCAATACTCCGTGCTTGGCTCTTCGAGCATTTTCTTCATCCGTATCCCAAGGATTCAGAGAAAATCATGCTAGCAAGACAGACAGGCCTAACCAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTATGGAAGCCAATGGTTGAAGAAATGTATAAAGAAGAGTTTGGTGATTCAGATAACATAAGCTGCAATATTCCATGTGAAACCATGGTCAAAAGTAAAAGAGATGATGATGCTCAAGCCACTGAGGATTCACAAGAGAATTTAGCAAGCATTGCTGCAGAACTTGATAACAACAACAATAATGGGGTTTATAGTTGTGGAAGCATAATGGGTTGTAGTACTAGTCCTGCTGCTGGTACATATGATTTTGCAGAGTTGGGTAACTTTACATCTACAATGGGTGGCCAGGTGTCACTTGCATTGGAATTGAGGAACTGTGAAAGGGATGGTGGGTTTGGTGGTGGCATGTCTGATAATGATGGCATCCACAACAAAAGGCTTAATCAGATTCAGGGTTTGGCTTCTTCTTCTTCTTCTTCCTCCCCAGAGACTACTGATCACCTGCTAGATTATCATTTCACAGATTCAGGAAAGCAACAACACAGGTTCAGCACCAACCCTCATCTTCTGCATGAGTTTGTTGTCTGA 1578 0.4265 MYPNQAFSAGSYAEMLSGGTGNNPLLSHNMVDHPACNSFVEGEQNSQQFQGLSLSLGTSVPSFQYHYPGAATTTTAAAECMVSLSSGGYHESSAKREGLLYNSNNSCLQGSSFSSNGVMNSHYLKAAQELLDEIVGVRKALLKDKQEKFNNIDGSKDSDGKCNTQSSLQNNNNAKSPNELSAEERQSFLEKKTKLLALLDEVDKKYRQYCHQMQIVVSSFDMVAGCGAAEPYTWLALRTISRHFRSLRDAISGQIQVIQRCLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSDNISCNIPCETMVKSKRDDDAQATEDSQENLASIAAELDNNNNNGVYSCGSIMGCSTSPAAGTYDFAELGNFTSTMGGQVSLALELRNCERDGGFGGGMSDNDGIHNKRLNQIQGLASSSSSSSPETTDHLLDYHFTDSGKQQHRFSTNPHLLHEFVV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151126g00008 525 ProSiteProfiles 'Homeobox' domain profile. 291 354 IPR001356 GO:0003677
Stsc151126g00008 525 SMART HOX_1 294 358 IPR001356 GO:0003677
Stsc151126g00008 525 CDD homeodomain 294 355 IPR001356 GO:0003677
Stsc151126g00008 525 Gene3D - 291 369 - -
Stsc151126g00008 525 FunFam BEL1-like homeodomain protein 4 297 359 - -
Stsc151126g00008 525 SUPERFAMILY Homeodomain-like 295 362 IPR009057 -
Stsc151126g00008 525 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 387 - -
Stsc151126g00008 525 MobiDBLite consensus disorder prediction 152 183 - -
Stsc151126g00008 525 Pfam Homeobox KN domain 311 350 IPR008422 GO:0003677|GO:0006355
Stsc151126g00008 525 MobiDBLite consensus disorder prediction 156 183 - -
Stsc151126g00008 525 Pfam Associated with HOX 118 252 IPR006563 -
Stsc151126g00008 525 SMART prehox3 111 253 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151126g00008 Stsc-Chr151126 35911 38680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151126g00008 102 524 Homeobox Transcription Factor Family AT2G16400 47.575 7.56e-114 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc151126g00008 POX 4.1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151126g00008 - - aip:107610078 717.227