Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151125g00009 ATGACAAATTTGCCCCAGTCATTATCGATGAACGCAGCCTTTGGCGGCAGCGGTGCCGTTCCTCCGCCTTCTCCCGGTGGCTCCTCCCAGAACTCCCCCGGAGGCACCAAGGATCGCAAGATGGCCTCCGCCGAGCAGCTCGTCCTCGAGCTCAGCAACCCCGACCTCCGTGAAAATGCTCTACTTGAACTCTCCAAGAAGAGAGAATTATTTCAAGATCTTGCTCCATTATTATGGAATTCTTTTGGTACTATTGCTGCACTTTTGCAGGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCAGCACAATCAAATCGTGTGTGCAATGCACTTGCCCTTCTTCAGTGTGTAGCATCACACCCTGATACAAGGATGTTGTTCCTCAATGCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACCAGCAAATCGCGACCATTTGAATACTTGAGACTCACCAGTCTTGGCGTCATTGGTGCTTTGGTGAAGGTTGATGATACGGAAGTCATAAGTTTCCTTCTTTCAACTGAGATAATTCCATTGTGCCTACGCACCATGGAAATGGGCAGTGAACTATCAAAAACAGTTGCAACTTTTATTGTTCAGAAAATCCTATTAGATGATGTGGGCTTGGATTATATTTGCACTACAGCAGAGCGTTTCTTCGCAGTAGGTCGTGTTTTAGGAAACATGGTGGCAGCTCTTGCTGAGCAGCCCTCATCTCGATTGTTAAAGCATATCATCAGATGCTATCTTCGCCTGTCAGATAATCCAAGGGCTTGCGATGCATTAAGAAGTTGTCTTCCAGACATGTTAAGAGATGCTACTTTCAGCAACTGCCTTCGCGAGGACCCTACAACCAGGAGGTGGCTAACACAATTACTTCACAACGTCGGCGTGAGTCGGGTGCCTGCCCTCCAAGCTGGAGGAGGCTTCGACCATATGATGGTGACATGA 978 0.4683 MTNLPQSLSMNAAFGGSGAVPPPSPGGSSQNSPGGTKDRKMASAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSNCLREDPTTRRWLTQLLHNVGVSRVPALQAGGGFDHMMVT 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151125g00009 325 PANTHER UNCHARACTERIZED 38 308 IPR007216 GO:0006402|GO:0030014
Stsc151125g00009 325 MobiDBLite consensus disorder prediction 23 37 - -
Stsc151125g00009 325 Pfam Cell differentiation family, Rcd1-like 47 305 - -
Stsc151125g00009 325 MobiDBLite consensus disorder prediction 1 43 - -
Stsc151125g00009 325 SUPERFAMILY ARM repeat 49 306 IPR016024 -
Stsc151125g00009 325 Gene3D - 35 306 IPR011989 -
Stsc151125g00009 325 FunFam Cell differentiation protein RCD1 37 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151125g00009 Stsc-Chr151125 86069 93218 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Stsc151125g00009 Rcd1 6.5e-130 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151125g00009 K12606 - gmx:100784529 582.408