Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151124g00015 ATGGGGAGATCACCAAGTGGTAGTAGTGATGAAGAGAGTGGGTTGAAGAAGGGTCCATGGACACCGGAAGAGGATAGAATATTGGTGGAATACATAAAGAAAAACGGCCATGGAAGTTGGAGAGCACTGCCTAAGATTGCAGGTTTGAACAGATGTGGAAAGAGTTGTAGGCTCAGGTGGACTAACTACCTCCGGCCTGATATCAAGAGAGGAAAGTTCTCTGAGCAAGAAGAGCAACTCATCATCAATTTACATGAAGTTCTTGGCAATAAGTGGTCAGCAATAGCAGGTCATCTGCCAGGAAGAACAGACAACGAAATCAAGAATTACTGGAACACTCATTTGAGAAAGAAGCTTCTTCAAATGGGGTTAGATCCAGTTACTCATCGTCCAAGAACAGATCATCATCATCACCTTCAACTTCTTTCAAATCTTCATCACTTGCTTCTTGCTGCAAACATTCTTAACACCACCAACAACAACAATAATAATCCTCTAATAAGCACTCTTCTATTTAACTCTGATCATGCCAAACTCCAAATCCTCCAAAACATGCTTCAAATCCTTGGCACCACTAATAATAACAACAATCTTATTGCACCAAACTTGGAGCTACTCCTTAATCAACAATTTGGTCCAATATCTTCGTCGTCGTCGTCATCAGTTCCAAATGGTTTCTATGAATCTTTAGGGTTGAATCAATCTATGATCCAAAACCTTTGTAATGTTGGTAATGATTTTTTCTTCCCATGTCAACATCAAAATCAGCCAAATTTCCAAAACTTTGAAGCTCCTAATAACAATCAGCACAACATGAATAGTAATGAGAATGAGCATAACGTTGTTGATGTCACAAATAATAATTCTTCTAATAATTCTCCTACAACACCATTGAATTATTATTCATCATCATCACTTCCAAATCTTATTTCAGCCTCATCATCACCTGATGATAAATGTCCCAACAAAGTAAATAATTATAACAATAATAATAATAATGATAATGATAATTACAACCATTGTAATAATTCTCCAAGTTCATCCAACAACTTTGAAATGTGGGCAGATTTCATGTATGAGGAAGCAAGTGATTCTTATTGGAAACACATCATAGAGTAA 1119 0.3682 MGRSPSGSSDEESGLKKGPWTPEEDRILVEYIKKNGHGSWRALPKIAGLNRCGKSCRLRWTNYLRPDIKRGKFSEQEEQLIINLHEVLGNKWSAIAGHLPGRTDNEIKNYWNTHLRKKLLQMGLDPVTHRPRTDHHHHLQLLSNLHHLLLAANILNTTNNNNNNPLISTLLFNSDHAKLQILQNMLQILGTTNNNNNLIAPNLELLLNQQFGPISSSSSSSVPNGFYESLGLNQSMIQNLCNVGNDFFFPCQHQNQPNFQNFEAPNNNQHNMNSNENEHNVVDVTNNNSSNNSPTTPLNYYSSSSLPNLISASSSPDDKCPNKVNNYNNNNNNDNDNYNHCNNSPSSSNNFEMWADFMYEEASDSYWKHIIE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151124g00015 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 322 - -
Stsc151124g00015 372 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Stsc151124g00015 372 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Stsc151124g00015 372 SMART sant 16 66 IPR001005 -
Stsc151124g00015 372 SMART sant 69 117 IPR001005 -
Stsc151124g00015 372 Gene3D - 16 69 - -
Stsc151124g00015 372 Gene3D - 72 119 - -
Stsc151124g00015 372 CDD SANT 72 115 IPR001005 -
Stsc151124g00015 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Stsc151124g00015 372 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Stsc151124g00015 372 MobiDBLite consensus disorder prediction 259 343 - -
Stsc151124g00015 372 CDD SANT 19 64 IPR001005 -
Stsc151124g00015 372 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Stsc151124g00015 372 MobiDBLite consensus disorder prediction 1 21 - -
Stsc151124g00015 372 FunFam MYB-related transcription factor 16 69 - -
Stsc151124g00015 372 FunFam Transcription factor MYB39 72 133 - -
Stsc151124g00015 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Stsc151124g00015 372 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151124g00015 Stsc-Chr151124 65960 67658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151124g00015 1 372 MYB Transcription Factor Family AT5G16770 47.105 1.54e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151124g00015 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151124g00015 K09422 - gmx:547488 336.65