Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151124g00006 ATGAGAGACCTTTGCAGAAACTTCCAGCGTGGCAGCTGCCAATACGGAGATAGGTGTAAATTCATGCATGCTGTTCCACAACAGCAACAACAACAAAGGAATTTGAATAGTAATAATAGCAATTTTCATGGTTTTGGGGTTCAGAATGGTTTTCATCAACAGCAGCAGCAAAATGCTAACCCTTTTGGATTTGGCTCTAAATCTGCTTCACAACCACAACAACAGCAGCCAAAGACCAATCCTTTTGGGTTTGGGGTGCACAACAACTCACAATTCAAAGGGACCCCTCAACAGAACCAATTTAAGCCTTTTGAAAACAAATGGACTCGGGGTGGCGCTACGCGTCAATCTGATAACAACCCCATATCATCGAATCACGAGTGTACAGATCCTGAGGTCTGCAAGCGCCAGATTGCAGAAGATTTCAAGCAAGAGAAGCCACTCTGGATACTTACATGCTATGGACACGCTAAAGGTGCACCTTGCGACATAGTTGGTGATATTAGCTATGAAGAACTGAGGGCAGAAGCTTACGAGCATGCTAAACGAGGAATGAACTTGCAATCAATTATTGAGAAAGAGAGAAACGCACTGAATTCCAAGTTGGCTGAGTTCCAGAAACTGCTTTCTGAACCCTACAGAATGCCATTTAATCCTTCTCTTAACAGTCAAAATAACCAAAATGCAAATCCATTTTCAATGCCTATACAAAATACTGGTCAGCATAATGCAAATCCATTTCCAATAACTACACAAAACAATGGTCCTGTGTCAGTTTCAAGCTTTAGCCAACTGGGTGCTTCGTTGAACGCTGGTTTTGATAGGTCCACTGCACCAGCAGCAAACACTCCGCCACTGTCTAGTTTCTTCGGAAGTGGAGGAAACACTTTTGCACCCAACACTGCAAACCCAAGCACCAGGGGCTTCTCAGGTGCTCCAAGCAGCACCTTCTCTCCCCCAGCGCAGTCAACAATGTTCCCGAATTCAACTTCTCAGCAACCATCCTTTGGCTTCAATAACTTGAGCTCCACTCCAATGTTTCAGACTACACCAGATGTTCAATCTTCAAGCATGTCCCAAGAAGAGAATGTTTCCACAGATCTCAGCATTTGGTTAAAAGAGAAATGGAATCCTGGAGAGATTCCTGAAGAAGCTCCTCCAGATTCGGTTGTTCGGTAG 1179 0.4411 MRDLCRNFQRGSCQYGDRCKFMHAVPQQQQQQRNLNSNNSNFHGFGVQNGFHQQQQQNANPFGFGSKSASQPQQQQPKTNPFGFGVHNNSQFKGTPQQNQFKPFENKWTRGGATRQSDNNPISSNHECTDPEVCKRQIAEDFKQEKPLWILTCYGHAKGAPCDIVGDISYEELRAEAYEHAKRGMNLQSIIEKERNALNSKLAEFQKLLSEPYRMPFNPSLNSQNNQNANPFSMPIQNTGQHNANPFPITTQNNGPVSVSSFSQLGASLNAGFDRSTAPAANTPPLSSFFGSGGNTFAPNTANPSTRGFSGAPSSTFSPPAQSTMFPNSTSQQPSFGFNNLSSTPMFQTTPDVQSSSMSQEENVSTDLSIWLKEKWNPGEIPEEAPPDSVVR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151124g00006 392 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Stsc151124g00006 392 MobiDBLite consensus disorder prediction 284 367 - -
Stsc151124g00006 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2 23 IPR000571 GO:0046872
Stsc151124g00006 392 Gene3D - 1 71 - -
Stsc151124g00006 392 PANTHER MAKORIN-RELATED 4 213 IPR045072 GO:0000209|GO:0061630
Stsc151124g00006 392 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Stsc151124g00006 392 MobiDBLite consensus disorder prediction 27 86 - -
Stsc151124g00006 392 MobiDBLite consensus disorder prediction 284 392 - -
Stsc151124g00006 392 Coils Coil 191 211 - -
Stsc151124g00006 392 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151124g00006 Stsc-Chr151124 31374 34922 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc151124g00006 zf-CCCH 1.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151124g00006 K14321 - gmx:100814339 437.573