Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151124g00005 ATGAGAGACCTTTGCAGAAACTTCCAGCGTGGCAGCTGCCAATACGGAGATAGGTGTAAATTCATGCATGCTGTTCCACAACAGCAACAACAACAAAGGAATTTGAATAGTAATAATAGCAATTTTCATGGTTTTGGGGTTCAGAATGGTTTTCATCAACAGCAGCAGCAAAATGCTAACCCTTTTGGATTTGGCTCTAAATCTGCTTCACAACCACAACAACAGCAGCCAAAGACCAATCCTTTTGGGTTTGGGGTGCACAACAACTCACAATTCAAAGGGACCCCTCAACAGAACCAATTTAAGCCTTTTGAAAACAAATGGACTCGGGGTGGCGCTACGCGTCAATCTGATAACAACCCCATATCATCGAATCACGAGTGTACAGATCCTGAGGTCTGCAAGCGCCAGATTGCAGAAGATTTCAAGCAAGAGAAGCCACTCTGGATACTTACATGCTATGGACACGCTAAAGGTGCACCTTGCGACATAGTTGGTGATATTAGCTATGAAGAACTGAGGGCAGAAGCTTACGAGCATGCTAAACGAGGAATGAACTTGCAATCAATTATTGAGAAAGAGAGAAACGCACTGAATTCCAAGTTGGCTGAGTTCCAGAAACTGCTTTCTGAACCCTACAGAATGCCATTTAATCCTTCTCTTAACAGTCAAAATAACCAAAATGCAAATCCATTTTCAATGCCTATACAAAATACTGGTCAGCATAATGCAAATCCATTTCCAATAACTACACAAAACAATGGTCCTGTGTCAGTTTCAAGCTTTAGCCAACTGGGTGCTTCGTTGAACGCTGGTTTTGATAGGTCCACTGCACCAGCAGCAAACACTCCGCCACTGTCTAGTTTCTTCGGAAGTGGAGGTATATATTTACTGTAA 897 0.4259 MRDLCRNFQRGSCQYGDRCKFMHAVPQQQQQQRNLNSNNSNFHGFGVQNGFHQQQQQNANPFGFGSKSASQPQQQQPKTNPFGFGVHNNSQFKGTPQQNQFKPFENKWTRGGATRQSDNNPISSNHECTDPEVCKRQIAEDFKQEKPLWILTCYGHAKGAPCDIVGDISYEELRAEAYEHAKRGMNLQSIIEKERNALNSKLAEFQKLLSEPYRMPFNPSLNSQNNQNANPFSMPIQNTGQHNANPFPITTQNNGPVSVSSFSQLGASLNAGFDRSTAPAANTPPLSSFFGSGGIYLL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151124g00005 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2 23 IPR000571 GO:0046872
Stsc151124g00005 298 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Stsc151124g00005 298 Gene3D - 1 78 - -
Stsc151124g00005 298 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Stsc151124g00005 298 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Stsc151124g00005 298 MobiDBLite consensus disorder prediction 27 86 - -
Stsc151124g00005 298 Coils Coil 191 211 - -
Stsc151124g00005 298 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 87 284 - -
Stsc151124g00005 298 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151124g00005 Stsc-Chr151124 31374 34927 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc151124g00005 zf-CCCH 1.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151124g00005 K14321 - gmx:100782777 328.176