Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151123g00019 ATGGCAGTCATGGCTGATTTCAGGTTCTTCAGGTTCATCCTCGCCGGTGACGTCAATCAGCTGAGATTGGCCGCGGCGTTTTCTGCGGCCGCGCGGGACTCCATGGCCAACCCGGTGACACTCATAACCACGAACGGAATCGAATTTAGGGTTGAGTGGATCGTGGAGCAGGAGCGTTTGAACCGCATCGTGCTCACTCGAGGGTGGGCGGATTTCTCCCGGCATTACATTCTGCAGGAAGCGCATCTATTACTGTTTAGCTACCACTCCCCGGGAACCATGTATGTCGCCATCCATGGAGGGAATCGAATGGAGATCGATTACGGCAGGTACTTGCAGCGAGGATGTCGCAGGGGGTTACCGCAGATCGGTAACCACGTCGCCCATTTCCATGGGATCATAGGGCGCGAGGATAGACGGAGACCATACAATCTAGTGTTTCCAAGGAGGTTTGCGACCCAGTTCGGCGCCGTGCTACCTGATCAGTTGAGCATGGTGACGCCGACCGGTTGGTCAAGGAGAGTGAGGTGGACCAGGGACACAGAAGGGATTATCAGACTTGGAATGACTGGGTGGCCGTGGATGTGCCTCCATTATGGACTGTGGCCAGATACGTTGGTGGTGTTCTGTTACCACCCACCAGCCACCATGTACGTGGTGTTTTACCGGCCAAGCGCAATGGAGGTGAACTATCTCCAACACGGTGACGACATAACGAGATCCACGTGCATCAACAACCCCAGAGACACGCCGGCCAGGCACATGGTAGACTACTTCAGGTCACACCAACCATTCTTCGTCGTCCCCATATGCTTTATGCGCGGCTCGCCCAACTTGCTGCCAAACATGCCGCACCTGTCGGGGAATGATGCTTCCGCTGTTATTGAAGTCTCGCATGGATCCAACACATGGCGGGTCGCATACGCGCGTTTCGCGGAAAGGGGTTCGGGTTTATTGGGGAGAGGCTGGTGCACCCTGGCCACTGCGCTAGACTTACGGCCGGGCAACTTGTGCGTGTTCGAAGAAGTGGCCCCATCGCGCTACCAGCTCCATATATACTGA 1062 0.5593 MAVMADFRFFRFILAGDVNQLRLAAAFSAAARDSMANPVTLITTNGIEFRVEWIVEQERLNRIVLTRGWADFSRHYILQEAHLLLFSYHSPGTMYVAIHGGNRMEIDYGRYLQRGCRRGLPQIGNHVAHFHGIIGREDRRRPYNLVFPRRFATQFGAVLPDQLSMVTPTGWSRRVRWTRDTEGIIRLGMTGWPWMCLHYGLWPDTLVVFCYHPPATMYVVFYRPSAMEVNYLQHGDDITRSTCINNPRDTPARHMVDYFRSHQPFFVVPICFMRGSPNLLPNMPHLSGNDASAVIEVSHGSNTWRVAYARFAERGSGLLGRGWCTLATALDLRPGNLCVFEEVAPSRYQLHIY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151123g00019 353 ProSiteProfiles B3 DNA-binding domain profile. 301 353 IPR003340 GO:0003677
Stsc151123g00019 353 PANTHER B3 DOMAIN-CONTAINING 8 108 - -
Stsc151123g00019 353 Gene3D - 248 353 IPR015300 -
Stsc151123g00019 353 Gene3D - 2 102 IPR015300 -
Stsc151123g00019 353 SUPERFAMILY DNA-binding pseudobarrel domain 255 353 IPR015300 -
Stsc151123g00019 353 SUPERFAMILY DNA-binding pseudobarrel domain 127 225 IPR015300 -
Stsc151123g00019 353 ProSiteProfiles B3 DNA-binding domain profile. 6 102 IPR003340 GO:0003677
Stsc151123g00019 353 SUPERFAMILY DNA-binding pseudobarrel domain 8 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151123g00019 Stsc-Chr151123 104078 105792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151123g00019 9 140 REM Transcription Factor Family AT4G33280 24.242 2.12e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151123g00019 - - ahf:112746889 269.626