Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151121g00007 ATGCTGAAGACTGTGCATTCTATCTTAAAATTAGAACTTACAAATTTGGATTCAACTGCAAGTTTAATCATCCACTTGGTAGGAGGAAGAATCAGGTGGTCTCAGATAGCACAACATTTACCAGGAAGAACTGACAATGAGATACAGAACTATTGGCACTCATATTTGAAAAAGAAAGTGATGGACAATGCTAAGGAAATTGAATCGCATGAACAAGTTCACTATTCTACCTCATCAAGTTCAGAAACCATGGATTCTTCTTCACACACACTGCAGAATCTTGCAACACAAGGCACACACAATAATTATAACTTCACAAATGTGTTTTATTTTCTACTTCGGCTTCAGCTTCAGCTTCATTGTATTTCATTCTGA 375 0.3627 MLKTVHSILKLELTNLDSTASLIIHLVGGRIRWSQIAQHLPGRTDNEIQNYWHSYLKKKVMDNAKEIESHEQVHYSTSSSSETMDSSSHTLQNLATQGTHNNYNFTNVFYFLLRLQLQLHCISF 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151121g00007 124 CDD SANT 29 56 IPR001005 -
Stsc151121g00007 124 ProSiteProfiles Myb-like domain profile. 29 56 IPR001005 -
Stsc151121g00007 124 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 60 IPR017930 -
Stsc151121g00007 124 Pfam Myb-like DNA-binding domain 24 56 IPR001005 -
Stsc151121g00007 124 Gene3D - 14 91 - -
Stsc151121g00007 124 PANTHER MYB DOMAIN PROTEIN 55 21 95 - -
Stsc151121g00007 124 SUPERFAMILY Homeodomain-like 29 62 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151121g00007 Stsc-Chr151121 50532 51627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151121g00007 32 97 MYB Transcription Factor Family AT4G09460 38.028 7.05e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc151121g00007 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151121g00007 K09422 - gmx:778167 99.7525