Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151120g00019 ATGAAAGACGGTGGTAGGAAGCAGGGTGCAGCCTCACCTTGTGCTGCATGCAAGCTTCTCCGGCGAAGGTGCGCCGTTGACTGCGTCTTTGCGCCGTATTTCCCGGCGGATGAGCCTCACAAGTTTGCAAATGTGCATAAGGTCTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGAGCTACCAGAGCATCAGAGAGGAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGAGTGAGAGACCCTGTTTATGGTTGTGTTGGAGCCATTTCTTCTCTTCAACAACAGATTGATGCCTTGCAAACCCAATTGGCTGTGGCTCAGGCTGAGGCTGTTCATTTGAGGGTGCGCCAGAGCGCATCCTCCATCTACTGGACCCAACAAGCCCATAGCCCAACCACTAGTGGCTCCCCATCATCCAAGCCCATTTTTGACATGGATATGGGCTTAGACCATACCTCTTATGCGGATTCTATATGGTCGTGA 492 0.5122 MKDGGRKQGAASPCAACKLLRRRCAVDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAVAQAEAVHLRVRQSASSIYWTQQAHSPTTSGSPSSKPIFDMDMGLDHTSYADSIWS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151120g00019 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 129 - -
Stsc151120g00019 163 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Stsc151120g00019 163 Coils Coil 92 119 - -
Stsc151120g00019 163 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151120g00019 Stsc-Chr151120 123127 127043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151120g00019 1 163 AS2 family AT1G31320 69.767 1.85e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc151120g00019 LOB 1.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151120g00019 - - gmx:100306560 270.396