Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151120g00017 ATGCCGGGAACGGAAGTTGCAGTTGCTCCCAAAAGGCGCAATAGAATATTGGATTCAGCAGGAGAGTCACATCTAAATTCCTGTCATAAGGAACAAACAGCTAAGATGCTTCTCCGTATACAAGATCCAGGGGTATTATGTCATACCAGAACTGATGTCAAAGGTGTTGAGCTTCATATAGGGCTCACTTCAGTTGCTTTTGTTCACCCAGAAACAGCCAAGCAGTTCTCATTTAACATGCTTCAGCCAGTTTCCTTAGTGCCTAGAATATCCAAGGAGAATGCTAATATTTCCAAAACAAATGTTTTGAAATCCAAAGGCGGGTCAACTGGCACTGAAGTTGATAATGGAAATTTAACTGACAAGAAACAACATCGACAAGCAGTTGTTCATCTCATATTTTCAGAATCTGTTGCTGCAGGGCATGTGATGCTAGCCAAGTCTCTTCGACTGTATTTGAGAGCCGGCCTGCATACATGGGTTTATTTGAAAGCATATGATGTCATTGTGGAGAAAAGTGTTCCATCCATCACTTTTTCTCCTTGCCAATTCAAACTATTAAGGCCTGATAGTTCTGCCGAGAAAGATGGTCTGGATGGCCACAATAATCACATAAACGGAAAATTGCTTGCAAAATATATGTCAGGTGACTTTTTGGACACTACAGATTGGTCGATTAACAATGAAGTTGTTGCAGCTCTTTCTGATGAATCCAACTGCAAAGAAGAGGAAGAGACTGCAAATCAGTCTCAGAATCAAAAGGAAATAAAGAGTCTTGTTCGACTGTGGTATATTGCACAACTTGAGGCAATTACTTCTATTTCGGGTATAGAGGTGAATTCATTGGTCATGTGTAGCCAAACCTTGCTTGATTTCAAATTAAACTGTTACAGCCTTGGGGATAATGGGAGAGCTCCCCTACCTCATAATTCTTCAGAGAACAGTGGCAAGACAGCTGAAGTGTTATTTATTTTGACTTTTGGTGATGGACATCTGCATCATGGGAAACCTAATGCATATGAAGTTGCTCTTGGTAAAAGCCTCAAAAGTATCAATGTAGGTGATTTGCAGCTTTTTGAAGGGATGAAATTGGGTGATCCCATTTCTATTCATTCTATCGAAGAGACAGCATCTCAACAGCACATTAATTCAGATGTATCTTTACTTAGCTGGATGGAGAAACCAGCTTTTGATATTATTAATAGGATGTTGGTATTGTTATCTTCGGAGTCTGGTCTGTGGTTTGGTTCATGCAACTTGCCACTCCCTGGACATGTTTTAGTACATGGACCACCAGGCTCTGGGAAAACTTCGTTATCAAGGGCTGTAGCCAAATCCCTTGAGAATCATAAAGATATCTTAGCACACATAGTTTTTGTGCCCTGCTCAAAACTTTCTTTGGAGAAGGTTCCAATAATTCGCCAAGAACTAACGAACCATGTGGCGGAAGCTGTAGACCATGCGCCCTCCATTGTAATATTTGATGATCTTGATAGCATAATTTCAACTTCTGATTCTGAAGTATCTCAGCCCTCAGTGTCTGTTAATGGACTCACTGATATTTTGGTTAACATCATCGATGAATATGGGGAGAAGAGACGCAAATCATGTGGATTTGGACCGGTAGCCTTCATAGCTTCCATACAATCACTGGAGAAACTACCGCAATCTTTGAGTTCTTCAGGACGCTTTGACTTCCACATACAATTGCCAGCTCCGGCAGCTTCAGAGCGTAAAGCTATGTTGAAGCATGAAATTGAAAGGCGTCACTTGCAATGTGGTGATGACATCCTGCTTGATGTGGCTGTCAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAGCTGTCCATGCTGCTGTTCGTCGATTTTTGCCATCAAATGGTGTCAATTTTGAGCACGAGAGTCCAGCTTTACTAAGAGATGATTTCTCCCAGGCAATGCACGATTTTCTTCCAGTTGCAATGCGTGATATCACAAAATCTGCATCTGATGATGGTCGTTCTGGGTGGGATGATGTGGGTGGCCTTGTTGACATCCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAGTTTCCGAAAACTTTTGCAAAAGCACCGTTGAGGTTGAGATCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCGGCTGCTTCATCTCTTCGATTCATATCAGTGAAAGGACCAGAGCTGTTGAACAAGTATATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTGCTAAAGCAGCAGCAGCAGCTCCTTGCTTACTATTTTTTGATGAGTTTGATTCTATTGCTCCTAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTCGTTAATCAATTTCTTACTGAGTTAGATGGTGTTGAAATTTTAACCGGCGTATTTGTATTTGCTGCAACAAGTAGACCAGATTTACTTGACGCAGCACTGCTGAGACCTGGTAGGTTAGATCGACTTCTTTTCTGTGATTTTCCATCTTGGCATGAGAGATTGGAAATTCTGACTGTTCTTTCTAGAAAGTTACCAATGGCTCATGATATAGATTTGACTGCTGTAGCTAAAATGACCGAGGGATTCAGTGGAGCTGACCTCCAAGCTCTCCTCTCAGATGCACAGCTCGCAGCAGTCCATGAAGTTCTGGACAATTTGGATGCCTCTGCAGCAGATAAAACACCATTTATTACAGATGCTCTACTGAAGACCACTGCCTCGAGGGCTAGACCATCTGTTTCAGAAGAAGAGAAAAGAAGACTCTACAGTATCTATGGCCAGTTCCTGGATTCAAAAAGATCTGTCGCTGCTCAGTCAAGGGATGCCAAAGGCAAGAGAGCAACTCTAGCATGA 2901 0.4185 MPGTEVAVAPKRRNRILDSAGESHLNSCHKEQTAKMLLRIQDPGVLCHTRTDVKGVELHIGLTSVAFVHPETAKQFSFNMLQPVSLVPRISKENANISKTNVLKSKGGSTGTEVDNGNLTDKKQHRQAVVHLIFSESVAAGHVMLAKSLRLYLRAGLHTWVYLKAYDVIVEKSVPSITFSPCQFKLLRPDSSAEKDGLDGHNNHINGKLLAKYMSGDFLDTTDWSINNEVVAALSDESNCKEEEETANQSQNQKEIKSLVRLWYIAQLEAITSISGIEVNSLVMCSQTLLDFKLNCYSLGDNGRAPLPHNSSENSGKTAEVLFILTFGDGHLHHGKPNAYEVALGKSLKSINVGDLQLFEGMKLGDPISIHSIEETASQQHINSDVSLLSWMEKPAFDIINRMLVLLSSESGLWFGSCNLPLPGHVLVHGPPGSGKTSLSRAVAKSLENHKDILAHIVFVPCSKLSLEKVPIIRQELTNHVAEAVDHAPSIVIFDDLDSIISTSDSEVSQPSVSVNGLTDILVNIIDEYGEKRRKSCGFGPVAFIASIQSLEKLPQSLSSSGRFDFHIQLPAPAASERKAMLKHEIERRHLQCGDDILLDVAVKCDGYDGYDLEILVDRAVHAAVRRFLPSNGVNFEHESPALLRDDFSQAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAKAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFAKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMAHDIDLTAVAKMTEGFSGADLQALLSDAQLAAVHEVLDNLDASAADKTPFITDALLKTTASRARPSVSEEEKRRLYSIYGQFLDSKRSVAAQSRDAKGKRATLA 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151120g00017 966 Gene3D - 574 667 - -
Stsc151120g00017 966 ProSitePatterns AAA-protein family signature. 813 831 IPR003960 GO:0005524|GO:0016887
Stsc151120g00017 966 Gene3D - 844 923 - -
Stsc151120g00017 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 935 IPR027417 -
Stsc151120g00017 966 SMART AAA_5 709 845 IPR003593 GO:0016887
Stsc151120g00017 966 SMART AAA_5 422 574 IPR003593 GO:0016887
Stsc151120g00017 966 FunFam Peroxisome biogenesis protein 1 379 573 - -
Stsc151120g00017 966 Pfam AAA+ lid domain 865 901 IPR041569 -
Stsc151120g00017 966 PANTHER AAA-FAMILY ATPASE 69 939 - -
Stsc151120g00017 966 FunFam PeRoXisome assembly factor 844 920 - -
Stsc151120g00017 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 653 IPR027417 -
Stsc151120g00017 966 FunFam Nuclear valosin-containing protein-like 671 849 - -
Stsc151120g00017 966 Gene3D - 674 936 IPR027417 -
Stsc151120g00017 966 Pfam ATPase family associated with various cellular activities (AAA) 713 840 IPR003959 GO:0005524|GO:0016887
Stsc151120g00017 966 Pfam ATPase family associated with various cellular activities (AAA) 426 571 IPR003959 GO:0005524|GO:0016887
Stsc151120g00017 966 Gene3D - 389 573 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151120g00017 Stsc-Chr151120 107090 115441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151120g00017 707 906 Calmodulin-binding Proteins AT3G56690 39.303 3.61e-37 149