Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151120g00005 ATGGAGAATATTGGTGATGAGTACAATCATTATTGGGAGACAAACATGTTCCTCCAAACCCAAGAACTCGACAACCATGGCAGCTGGGGTTTGGATGAAGCGTTGTCAGGATACTACGATTCGAGCTCGCCGGACGGCGCGGCTTCGTCGGCGGCGTCGAAGAATATTATGTCGGAGAGGAATCGGAGGAAGAAGCTCAATGAAAGGCTTTTCGCACTTAGATCAGTGGTCCCCAACATCAGCAAGATGGATAAGGCTTCAATAATAAAAGATGCAATTGAGTACATACAAAAGTTGCAGGAGCAAGAGAGGATTATTCAATCAGAGATAGTTGAGCTTGAGAGTGGGATGGTGATGGAGAAGAAGAACCCTAGTAGTAGCTATGAATTTAATGAGCATCATCATCATCAAGAACTTCCAGTGTTGTTGAGGTCCAAGAAGAAGAGAACAGATGAGCTTTATGATTCTCTCAATTCTAGAAACTCCCCTATTCATATACTTGAGCTGAGGGTAACATACATGGGAGAGAGGACAATAGTGGTAAGCTTGACATGCAGCAAAAGGACAGATACAATGGTGAAATTGTGTGAGGTTTTTGAGTCATTGAAGCTCAAGATCATCACTGCCAATATCACTTCCCTTTCCTCTGCCAGGCTTTTGAAGACAGTCTTCATTGAGGCAGATGAAGAAGAGAAAGATCTTTTGCAGATAAAGATCCAAACAGCAATTGCAGCTCTAAATGACCCTCTAAGTCCTATGAGTATTTGA 768 0.4284 MENIGDEYNHYWETNMFLQTQELDNHGSWGLDEALSGYYDSSSPDGAASSAASKNIMSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQKLQEQERIIQSEIVELESGMVMEKKNPSSSYEFNEHHHHQELPVLLRSKKKRTDELYDSLNSRNSPIHILELRVTYMGERTIVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSLSSARLLKTVFIEADEEEKDLLQIKIQTAIAALNDPLSPMSI 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151120g00005 255 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 46 118 - -
Stsc151120g00005 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983
Stsc151120g00005 255 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 240 - -
Stsc151120g00005 255 Coils Coil 96 116 - -
Stsc151120g00005 255 Gene3D - 47 115 IPR036638 GO:0046983
Stsc151120g00005 255 Pfam Helix-loop-helix DNA-binding domain 55 100 IPR011598 GO:0046983
Stsc151120g00005 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 116 IPR036638 GO:0046983
Stsc151120g00005 255 SMART finulus 56 105 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151120g00005 Stsc-Chr151120 37329 43943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151120g00005 1 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.031 2.65e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151120g00005 HLH 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151120g00005 - - aip:107639158 395.201