Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151119g00008 ATGGCTGCTGCTGCTTCTTCTTCTTCAAAGAAGGATTCATTGTTCCGTGGAATCCGGTGCCGGGGAGGGAAATGGGTATCCGAGATCCGGGAGCCGCGGAAGACGACAAGAATATGGCTCGGCACCTTCCTGAAACCGGAGATGGCTGCAGCAGCCTATGACGTGGCGGCACTGGCACTGAAGGGCGCAGAAGCGACCTTGAACTTCCCTACCATGGTAGGGAAGTATCCAGTGCCGGCGTCTAGCTCCGCAGCCGACATTCGCAGCGCTGCTACTGCCGCCGCACAAATGATTATGGCTGAACTTGCATCACCATCCAACAATAATAATAATGCGGTTCAGCCTAATACTGATAGTGAAAATAGTAACAATAATAATAACACTAACAATCATAGTGCTGCTGCTCCTTTGGGTGATGAACCGTTTGAATTTTTGGACGAGGAAGCCATTTTCTCCTTGCCAAGTTTGTTGATTGATATGGCGGAGGGAATGCTGCTGTCTCCACCCCGGATGAGCTTGTCGTCGCCGGACTCGCCGCCTGAAAATTATTCCGGCGGAGACAATTTGTGGAACTACTAG 579 0.5112 MAAAASSSSKKDSLFRGIRCRGGKWVSEIREPRKTTRIWLGTFLKPEMAAAAYDVAALALKGAEATLNFPTMVGKYPVPASSSAADIRSAATAAAQMIMAELASPSNNNNNAVQPNTDSENSNNNNNTNNHSAAAPLGDEPFEFLDEEAIFSLPSLLIDMAEGMLLSPPRMSLSSPDSPPENYSGGDNLWNY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151119g00008 192 ProSiteProfiles AP2/ERF domain profile. 14 70 IPR001471 GO:0003700|GO:0006355
Stsc151119g00008 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 164 - -
Stsc151119g00008 192 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Stsc151119g00008 192 MobiDBLite consensus disorder prediction 176 192 - -
Stsc151119g00008 192 CDD AP2 13 70 IPR001471 GO:0003700|GO:0006355
Stsc151119g00008 192 MobiDBLite consensus disorder prediction 169 192 - -
Stsc151119g00008 192 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Stsc151119g00008 192 Pfam AP2 domain 15 62 IPR001471 GO:0003700|GO:0006355
Stsc151119g00008 192 MobiDBLite consensus disorder prediction 105 134 - -
Stsc151119g00008 192 SMART rav1_2 14 76 IPR001471 GO:0003700|GO:0006355
Stsc151119g00008 192 MobiDBLite consensus disorder prediction 105 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151119g00008 Stsc-Chr151119 55340 55944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151119g00008 4 192 AP2-EREBP Transcription Factor Family AT5G52020 52.308 1.40e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151119g00008 AP2 5.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151119g00008 - - adu:107489031 248.054