Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151119g00007 ATGAACAAACTCAATCAATTATCATTTGATGAGTATCTATCCATGTGTTCTTCTTCTGAAGCGAGCTCATCCAACAACAACAATCCATCGCCGACAAACGCCACCTTAGACTACCACAATTCTATACTGGCATCATCGAGGCCGAAGAAGCGTGCGGGGAGAAGAATCTTCAAGGAAACGAGGCACCCGGTGTATCGAGGGGTGAGGAGGAGGAACAACAACAGGTGGGTCTGTGAGGTTCGCGTTCCCAATAACAAGTCCAAACGGATATGGCTGGGGACCTACGCCACACCTGAGATGGCGGCGCGTGCACACGATGTAGCCGCGCTCGCGCTTCGCGGGAAGTCAGCCTGCCTCAACTTTGCAGACTCTGCGTGGCGACTACTCCCCTTGCTTCCAGCGTATACAGATGGTGCTGAAGAGATAAGGAGAGTGGCCGCAGAGGCTGCCAAGATAGTTACAGTTGAGAACGGTTATGATAATAATAACTGCGGTCTAGGAAATACGGAAAATGCTGTTACTGAGTACGAGGTTTGCAGCGAGGAGAGCGCCGTGGAAAAAGATGTAAAGAAGGATTTGATTGTTGATATTAGTAATAATGATTATTACATGCATGATTGGGTTCAGAGCATGACGGAGGAGCCTTTACGATCACCGCTTCCATTCTTGAGATACGACTTTGGCACTTATAGGGAGTGGAATGATATGGAGGTTGATGCTGAGGTGTCATTGTGGAGCTTTTCCGTATAA 750 0.484 MNKLNQLSFDEYLSMCSSSEASSSNNNNPSPTNATLDYHNSILASSRPKKRAGRRIFKETRHPVYRGVRRRNNNRWVCEVRVPNNKSKRIWLGTYATPEMAARAHDVAALALRGKSACLNFADSAWRLLPLLPAYTDGAEEIRRVAAEAAKIVTVENGYDNNNCGLGNTENAVTEYEVCSEESAVEKDVKKDLIVDISNNDYYMHDWVQSMTEEPLRSPLPFLRYDFGTYREWNDMEVDAEVSLWSFSV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151119g00007 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 247 IPR045277 GO:0003700
Stsc151119g00007 249 MobiDBLite consensus disorder prediction 20 42 - -
Stsc151119g00007 249 ProSiteProfiles AP2/ERF domain profile. 64 122 IPR001471 GO:0003700|GO:0006355
Stsc151119g00007 249 FunFam Ethylene-responsive transcription factor 2 63 123 - -
Stsc151119g00007 249 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Stsc151119g00007 249 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Stsc151119g00007 249 SMART rav1_2 64 128 IPR001471 GO:0003700|GO:0006355
Stsc151119g00007 249 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Stsc151119g00007 249 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Stsc151119g00007 249 MobiDBLite consensus disorder prediction 20 52 - -
Stsc151119g00007 249 Pfam AP2 domain 63 114 IPR001471 GO:0003700|GO:0006355
Stsc151119g00007 249 SUPERFAMILY DNA-binding domain 64 124 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151119g00007 Stsc-Chr151119 35880 36629 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151119g00007 42 165 AP2-EREBP Transcription Factor Family AT1G12610 66.142 8.09e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc151119g00007 AP2 5.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151119g00007 - - pvu:PHAVU_003G212800g 212.616