LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151118g00004	ATGGCGGCCAGTGATCGCACGGTGTTGCAGTTTTCTTCTTCGTCCTCTTCTTCGCAGAGCTTGTCTGCGAGGGTTCACCCTCTCGTTGTGTTCAACATCTGCGACTGCTACGTTCGGCGCCCCGATCAAGCTGAGCGCGTCATCGGAACCCTACTCGGCTCCGTCCTCCCCGACGGCACCGTCGATATTCGCAACTCCTACGCCGTTCCTCATAATGAGTCCGTCGACCAGGTTGCCCTGGATATTGAGTATCACCATAACATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAGTCATAGTTGGATGGTATTCAACTGGACTTGGAGTTACTGGTGGTAGTGCGTTGATCCATGAGTTTTATTCTAGAGAAGTACCTAATCCCATACATTTGACTGTCGATACTGGATTCACAAATGGAGAGGGTACCATAAAAGCATATGTTTCAAACAATTTATCTCTAGGAGACCGCCAAATTGCTGCACAGTTTCAGGAAGTTCCATTGGATCTTCGAATGGTTGAGGCTGAGCGAGTTGGATTTGATACCCTGAAGTCAACCAACGTTGACAAAATCCCCTCTGATTTAGAAGGGATGGAAATGTCAATGCAACATTTACTAGCCTTGATTGATGACATATACAGATATGTTGATGATGTTGTGGAAGGGCGCGTTGCTCCGGACAACAAAATTGGGCGATTTGTATCAGATGCCGTAGGTGCCCTTCCCAAATTGCCCCCAGAAGTTTTTGATAAGCTTGTTAATGACAGCTTGCAGGATCACTTGCTCTTGCTATATTTGTCTAGCATCACAAGGACACAGCTTAGCTTGGCCGAAAAATTGAACACAGCTGCTCAAATTCTGTGA	867	0.4637	MAASDRTVLQFSSSSSSSQSLSARVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLISHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTNGEGTIKAYVSNNLSLGDRQIAAQFQEVPLDLRMVEAERVGFDTLKSTNVDKIPSDLEGMEMSMQHLLALIDDIYRYVDDVVEGRVAPDNKIGRFVSDAVGALPKLPPEVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL	288

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151118g00004	288	FunFam	Eukaryotic translation initiation factor 3 subunit F	9	189	-	-
	Stsc151118g00004	288	CDD	MPN_eIF3f	24	281	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Stsc151118g00004	288	SMART	pad1_6	22	153	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Stsc151118g00004	288	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	11	285	-	-
	Stsc151118g00004	288	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	21	126	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Stsc151118g00004	288	Hamap	Eukaryotic translation initiation factor 3 subunit F [EIF3F].	21	284	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Stsc151118g00004	288	Gene3D	Cytidine Deaminase, domain 2	10	189	-	-
	Stsc151118g00004	288	ProSiteProfiles	MPN domain profile.	23	154	IPR037518	-
	Stsc151118g00004	288	Pfam	Maintenance of mitochondrial structure and function	175	281	IPR024969	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151118g00004	Stsc-Chr151118	23116	26536	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151118g00004	2	288	Eukaryotic Initiation Factors Gene Family	AT2G39990	76.976	7.04e-164	455

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151118g00004	K03249		-	gmx:100790913	499.204