Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151118g00003 ATGTCAACAGGGTTTTGCATAAGAGAAAGAGAAGAAGGAGGAGGAACAAAGTGTGGTCGTTGGAACCCAACAAGCGAACAAGTGAAGGTTCTGACAGAGCTTTTCAGCTCCGGACTCAGAACTCCAAGCACCGATCAGATTCAGAGGATCTCCAATCAGCTTAGTTTCTATGGCAAGATTGAAAGCAAGAATGTCTTCTATTGGTTTCAGAATCACAAGGCTAGAGAGAGACACAAGCGAAGAAGGCTTTCTTTTCATCATCATGGAGTGGAAGATAATAATAATCATAATCATAACCACACCACCATCAATCTTAGTAATTCTTCTACACAAAGTTTTGCAGAGCTGTATTCAGAGCCAGAGAAGGTGATTGAGACTCTGCAACTATTCCCATTGAACTCGTTTGGTGAATCAGAATCAGAATCGGAATCATCAGAAAAGATGAGTAGGGTGCATGCAAATGATCAATGCAGGGATACTAATTATAATAATAATATGTTCTCATACACAATGGGGGAAAATAATGATCACCCACCATTAGACCTTCGCTTAAGTTTCATGTAA 564 0.3989 MSTGFCIREREEGGGTKCGRWNPTSEQVKVLTELFSSGLRTPSTDQIQRISNQLSFYGKIESKNVFYWFQNHKARERHKRRRLSFHHHGVEDNNNHNHNHTTINLSNSSTQSFAELYSEPEKVIETLQLFPLNSFGESESESESSEKMSRVHANDQCRDTNYNNNMFSYTMGENNDHPPLDLRLSFM 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151118g00003 187 MobiDBLite consensus disorder prediction 140 154 - -
Stsc151118g00003 187 MobiDBLite consensus disorder prediction 135 157 - -
Stsc151118g00003 187 SUPERFAMILY Homeodomain-like 16 86 IPR009057 -
Stsc151118g00003 187 ProSiteProfiles 'Homeobox' domain profile. 14 79 IPR001356 GO:0003677
Stsc151118g00003 187 SMART HOX_1 16 83 IPR001356 GO:0003677
Stsc151118g00003 187 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 11 110 IPR044555 GO:0003700|GO:0099402
Stsc151118g00003 187 Gene3D - 17 85 - -
Stsc151118g00003 187 FunFam WUSCHEL-related homeobox 11 17 85 - -
Stsc151118g00003 187 Pfam Homeodomain 18 78 IPR001356 GO:0003677
Stsc151118g00003 187 CDD homeodomain 20 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151118g00003 Stsc-Chr151118 13490 14379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151118g00003 13 187 Wox Gene Family AT3G11260 55.000 3.71e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc151118g00003 Homeodomain 1.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151118g00003 - - aip:107622108 263.077