Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151118g00001 ATGCGTGCAGTTCTGGTTCTATACAAAGTACCCAATGATGAGACCAGCATTTTCAAGAACAAGTGCATGAACCAAACGCCGATACCTTCCTTATATAAACCCCGTCCCCCTAATCCCTCTTCTCGCATCAGTTTCACCACTAAAGGACACTTCAATACAGTGATACACACATTTCCACATAAAATGGTTTCTTCTTCTTCGCCTGCACCAATTATTACTATCATCTCAAAATGCACCGTTTACCCTCACAAAACCTCAACACTCAACCCCCTCAAGCTCTCAATCTCAGACCTCAACATGCTCTCTTGCCACTACATCCAAAAGGGATGTCTCTACGCTGCACCCTCACTCCCTCAAACCACTCTAATCCAATCCCTTCAAGCTTCACTCTCTAAAACCCTCTCCATCTTCCCTCCCCTCTCCGGCACCTTCCGTACCACACCTTCCGGCCACGTCTACGTCCATTCCAATGACTCCGGCGTCGACTTCATCCACGCCGCCGCCGCTTCACTTTCCATCTCCGACCTCTTGTCCACAAACCACGCTTCCAACACCTTCCAACAACTCTTCCCCTTCCACAAGAAACTCAACTACACCGCTCATTTCTCTCCGATCATGGCTGTCCAGGTCACTGAGCTCGCCGATGGTCTCTTCATCGGTGTCGCCGTCAACCACGCCGTCACCGACGGAGCCTCCCTCTGGCACTTCTTCAACACCTTCGCTGAATTCTCCAGAGGAGCCTTGTCACCGTCGAGGCTCCCGGACTTCCGCCGGGACTCTATTCTGGTCTCCGACGCCGTTCTCCGGCTTCCGGAAGGCGACCTCAAGGTCTCCTTCAATTCCGACGAGCCCTTGCGCGAGAGGATCTTCAGCTTCAGCCGTGAATCCATTCGGATGCTGAAAGCAGAAGCAAACCGCCGCGCACTGCCGGAGAATCAAATCTATGGTGAAGACGACGGCTCTGCCGTTGAGTTGGCGGGGAAGATGAGCAACGACACTAAACTGAAAACGGTTACTGAAACCGTTGAGATCTCGTCCTTTCAGTCCCTCTGCGCGCTGACGTGGCGTGCGGTTACACGCGCGAGGAAGATTCCGTTATTGAAAACGACGACGTTTAGAATGGCGCTGAACAATAGCGTGAAGGCGTACGATAGCAATGCAGTGAAGCGCGCCATAGAAGATTGGGAGCGCGAGCCGCGGTGCTTCGCTTTGGGGAACCACGACGGCGCCACGGTGCAGATGGGGAGTTCGCCGCGGTTTCCTATGTACGATAATGATTTCGGGTGGGGGAAGCCGGTGGCTGTGAGGAGCGGAGCCGCCAATAAGTTCGACGGAAAGATGTCGGCGTTTCCCGGGAGGAATGGCGGCGGTTCTGTGGACTTGGAGGTGGTTTTGGCGCCCGATGCTATGGCGGCTCTTGAGTGTGATGATGAGTTCATGCTGTATGCGTCTGGTTAA 1458 0.5377 MRAVLVLYKVPNDETSIFKNKCMNQTPIPSLYKPRPPNPSSRISFTTKGHFNTVIHTFPHKMVSSSSPAPIITIISKCTVYPHKTSTLNPLKLSISDLNMLSCHYIQKGCLYAAPSLPQTTLIQSLQASLSKTLSIFPPLSGTFRTTPSGHVYVHSNDSGVDFIHAAAASLSISDLLSTNHASNTFQQLFPFHKKLNYTAHFSPIMAVQVTELADGLFIGVAVNHAVTDGASLWHFFNTFAEFSRGALSPSRLPDFRRDSILVSDAVLRLPEGDLKVSFNSDEPLRERIFSFSRESIRMLKAEANRRALPENQIYGEDDGSAVELAGKMSNDTKLKTVTETVEISSFQSLCALTWRAVTRARKIPLLKTTTFRMALNNSVKAYDSNAVKRAIEDWEREPRCFALGNHDGATVQMGSSPRFPMYDNDFGWGKPVAVRSGAANKFDGKMSAFPGRNGGGSVDLEVVLAPDAMAALECDDEFMLYASG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151118g00001 485 SUPERFAMILY CoA-dependent acyltransferases 100 250 - -
Stsc151118g00001 485 Gene3D - 378 479 IPR023213 -
Stsc151118g00001 485 Gene3D - 72 269 IPR023213 -
Stsc151118g00001 485 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 74 378 - -
Stsc151118g00001 485 Pfam Transferase family 72 377 - -
Stsc151118g00001 485 Pfam Transferase family 378 480 - -
Stsc151118g00001 485 Gene3D - 275 377 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151118g00001 Stsc-Chr151118 4334 5910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151118g00001 124 474 Monolignol Biosynthesis Gene Families AT5G48930 23.786 3.64e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151118g00001 - - cam:101506439 537.724