Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151117g00002 ATGGAACAGGGTCAGTATTGGACGATGCAAACAAAGAGAAAATTCTCTTTGGGGTACAATAACAATATAGATCGTTCTTCCTACGACGAGTCGTCATGGGAAGAACAAGCTTTCGCCGAAGACGCAGCCGGAGCCCTTGTTGGTGGATGCATATGGCCACCAAGATCATATTCTTGCAGCTTTTGTAGGAGAGAGTTTAGGTCAGCACAAGCTCTTGGTGGACACATGAATGTTCATAGAAGGGATAGAGCAAGGCTTAAGCAACAACAACCTTCTAGCCCCAACAACAAGAACAATAATAATAACAATGATGATGAAGTTATTATTCAAAACAATCATCCTTTCACATCTTTGGGATCATCATGTAATACCCTATTATACCCTTCTACTTCTACTTCTACTACTCTTTGTGGATTAGCTTTTAAAACTAATAACCCTAATTCTGATCTTGTTCCTTCAGCTTCTTCTTCATCACTAATACCCTCTCCTCCTTCTTCTTCTTCCAAGGCCTTATTATTGGCTCCTCCATCATTATTTCCATCTTCTTCTATTCTTGTTCATAAGAACTATTCCCAAGTCTATTGTTCTCAACCATGGTCAAACTTTGGTGGAGATAATAATAATAATCAAAGGTTGTGTTCTAATAATAAGTTCAACCCTGAAGAAGCTGATGTTGATCATGAGAAAATCTCACAAGGGTTACTAGATAAAGGGAAAAATGATGAAGAAGAAGACTGCGACGATGATGACGAAGATGAAGATGTTGGTGTGAGCTTGAATTTGGTTGTTTGTAGAACAACTCATCATCATCAATTTGAGGCTAAAGAGGAAGAACATCACATAAGTTTCAAGAAGAAGAGGAAAACAGAAGCTTCATCGATTCAATTTTTACCAAAGTCAACAAGCTCGGTTGATAGACATAATCATCATCACATGCATCCAAAGATGATTGAATTAAACCCTAACTCCATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACTGCAGCTCCGAGGTATAG 1023 0.3851 MEQGQYWTMQTKRKFSLGYNNNIDRSSYDESSWEEQAFAEDAAGALVGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQQPSSPNNKNNNNNNDDEVIIQNNHPFTSLGSSCNTLLYPSTSTSTTLCGLAFKTNNPNSDLVPSASSSSLIPSPPSSSSKALLLAPPSLFPSSSILVHKNYSQVYCSQPWSNFGGDNNNNQRLCSNNKFNPEEADVDHEKISQGLLDKGKNDEEEDCDDDDEDEDVGVSLNLVVCRTTHHHQFEAKEEEHHISFKKKRKTEASSIQFLPKSTSSVDRHNHHHMHPKMIELNPNSIEELDLELRLGNCSSEV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151117g00002 340 SMART c2h2final6 57 79 IPR013087 -
Stsc151117g00002 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Stsc151117g00002 340 Pfam C2H2-type zinc finger 57 81 - -
Stsc151117g00002 340 MobiDBLite consensus disorder prediction 73 108 - -
Stsc151117g00002 340 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Stsc151117g00002 340 MobiDBLite consensus disorder prediction 88 108 - -
Stsc151117g00002 340 MobiDBLite consensus disorder prediction 233 253 - -
Stsc151117g00002 340 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Stsc151117g00002 340 Gene3D Classic Zinc Finger 54 114 - -
Stsc151117g00002 340 PANTHER OS07G0101800 PROTEIN 27 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151117g00002 Stsc-Chr151117 18038 19084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151117g00002 23 177 C2H2 Transcription Factor Family AT2G37740 42.012 1.05e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151117g00002 - - adu:107475041 419.853