Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151116g00008 ATGGTGAAGCAGAACAATAATAACGTGGAGAAGCTTGCATCAATGGAGAAGAGTGATATGAAGTACAAAGGTGTGAGGAAGAGGAAGTGGGGGAAGTATGTTTCCGAAATAAGGCTACCGAATAGCCGAGAGAGGATTTGGTTGGGATCCTACGACACCGCCGAGAAAGCGGCGCGTGCCTTTGACGCCGCCATGTTCTGCTTACGTGGCGCCGCCGCCAAGTTCAATTTTCCCGGTGCTCCTCCGCAGATCGCTGGCGGCAGGTCCATGACCCCTACCCAAATTCAGGTTGCTGCCAGCAAGTATGCCAATTCTGATCCGGATCCGGTTCAACCCGGTTCTACCTCGATCGAATCTTCCACTGTGTTGTCGGAGGAGACTAAAAGAGTGATGCCATCGGCGTCATCGTCACCGTCACCGTCACCCTCCGAGGTAACTCTCCAAACGGAAAGTGACATCACTGCAATGAATGGGTCGGGTTCAAATCTATTTGCAACAATCGGGTCGGTTAACGACGATTCTATATTTGCGGGTTTTGATAATTTTGGGGGAGATTTCTACCTGCCAGAGATGCCAAGTTATGATTATGAAGAAGAGAATTTGGATGGTTTGATAATTGACGACACTTTCTTGTTCTTCCGCGTCGGTGGTGGTGCCGCTTTGTCCTCTTCATCTACATTCGCGGTTTTGAGTTTCTGGCCCCGAGAGCTCTCTGGTTTTCCGTTGCAGTACACATTTGAATTGGTAGCGGTATACCTAACTCAGGGTTTCTGTTCTTGGTTTGGGGAGATTAAGCATCTCGAAAAGAAGAATGGTGGTGAATCAAATGATGGGGATGAAGCTGCAAATTTAGGGGATGATGGTGTCTGTGATCCGTTGATGGTAAGGACTAAAGGAACAAGTCGTGGAAACGAACCTATTGACAGCAGGGATGTGAAGAGGAGGAAGTGCAGTACATGTGGAGAGCTTGGCCACCGTAAAACAAGGTGTCCCAACCCAACCAAAAATAAAGACAAATGCAGCCAGGATAAGATCCTCATGGAAAATCAATGTCTCAGAGGTAGTGAGGTACTAGACTCACAAGCAGATCTTGATTTTGTGGAATTATTAGCATTCCTTCCACATGATTTGAGGCACTTAACTGCTTTGAAAAGGCTTAGCATTGAGGCTTTTCTTGAGGTGACTCGTTTTGGAGATGAAGGTGAACAAGAAATTGAAGAAGACTATTCCTTGAAACTTAATCAATTCTCAATCAACCAATTACCAGAATTGTTAGAAGATAGTGTTCATAACCTTCAGAAGAAGAAGATATTTGGATGCCCTCAGCTAGTTGAGAAATGCAAAAAGAGATACAGGACCTGA 1362 0.4589 MVKQNNNNVEKLASMEKSDMKYKGVRKRKWGKYVSEIRLPNSRERIWLGSYDTAEKAARAFDAAMFCLRGAAAKFNFPGAPPQIAGGRSMTPTQIQVAASKYANSDPDPVQPGSTSIESSTVLSEETKRVMPSASSSPSPSPSEVTLQTESDITAMNGSGSNLFATIGSVNDDSIFAGFDNFGGDFYLPEMPSYDYEEENLDGLIIDDTFLFFRVGGGAALSSSSTFAVLSFWPRELSGFPLQYTFELVAVYLTQGFCSWFGEIKHLEKKNGGESNDGDEAANLGDDGVCDPLMVRTKGTSRGNEPIDSRDVKRRKCSTCGELGHRKTRCPNPTKNKDKCSQDKILMENQCLRGSEVLDSQADLDFVELLAFLPHDLRHLTALKRLSIEAFLEVTRFGDEGEQEIEEDYSLKLNQFSINQLPELLEDSVHNLQKKKIFGCPQLVEKCKKRYRT 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151116g00008 453 FunFam Ethylene-responsive transcription factor 2 21 79 - -
Stsc151116g00008 453 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Stsc151116g00008 453 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Stsc151116g00008 453 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Stsc151116g00008 453 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Stsc151116g00008 453 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 148 - -
Stsc151116g00008 453 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Stsc151116g00008 453 ProSiteProfiles Zinc finger CCHC-type profile. 315 332 IPR001878 GO:0003676|GO:0008270
Stsc151116g00008 453 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Stsc151116g00008 453 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Stsc151116g00008 453 MobiDBLite consensus disorder prediction 103 147 - -
Stsc151116g00008 453 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Stsc151116g00008 453 SUPERFAMILY Retrovirus zinc finger-like domains 299 340 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151116g00008 Stsc-Chr151116 85156 91327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151116g00008 1 208 AP2-EREBP Transcription Factor Family AT1G74930 46.479 4.39e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc151116g00008 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151116g00008 - - gmx:732656 227.639