Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151115g00024 ATGTTTCTAGTCTTAATTGGTGCATTAAGGTATGTGACAGTAGATGAAGATCATGGAAGGAACCTGTATTATTATTTTGTTGAATCAGAGTGTGAACCAAGCAAGGACCCGGTGGTTCTATGGCTTAATGGTGGACCTGGTTGTTCTAGCATGGATGGTTTTGTATATGAACATGGTCCATTTAATTTTGAGAAACCAACCATTAAAGGAGCATTGCCTAAGTTGACACTCAATCAATTTAGTTGGTCAAAGGTTTCAAATATCATATACTTGGACTCTCCTGCTGGAACTGGATTCTCTTACTCAAAGAATGAATCAGATTATGTCACTGGGGATTTAAGAACAGCCAATGATACACACGCTTTTCTCCTTAAGTGGTTCGAACAGTACCCTGAGTTCCAACAGAACCCATTCTTCATAGCTGGAGAGTCATATGCTGGGATTTATATTCCTACTCTTGCTGATGCAATAGTGAGAGGAATTGATGCATGCGTGACTGCAGGAAATGATGCATGTGGGAAGCCCGTAATAAATTTCAAGGGTTACATGATAGGAAATGGTGTTACCGATAAAATATTTGATGGCAATGCTTTGATTCCATTCACACATGGGATGGGTCTTATTTCTGATGAAATATTCCAGGAGAGCGAAAGAGTTTGCCAAGGAAACTACTATGATCCTCAAACTAATGATTGCAAGGATCAGCTTAAGAAAGTAAACAAGATTATTGCTGCGCTAAACGTATATGACATTTTGGAACCATGTTATCATAACAATGGGACATCATCATCATCTAGTAATAGTAGGTTGCCACAAAGCTTCAAGGAATTGGGTGTAACAGATAGACCTTTGCCTGTAAGGAAGAGAATGTTTGGTCGTGCATGGCCTTACAGAGCTATTGTCAATGATGGACTTGTACCAACTTGGCCTCAACTCAATAAACTCATGCAGAAGGACAGTGACATTGCACTCGATGTTCCATGCACTGATGTTGAAGTTGCTACAGAATGGTTGAACAATGATGAAGTTAGAAAAGCACTTCACACCGTCGAGAAAAGTGTGGTTAGCAAGTGGGAGATATGCACAGACCAAATTACTTACTACCATCCGACCGGAAGCATGATCAAGTATCACAAGAAGTTAACTTCTCGAGGCTATCGAGCACTCATATACAGTGGTGATCATGACATGTGTGTTCCATATACTGGAAGCCAAGCATGGGTAAGTTCGTTGGGATATAAGATTGTAGATGAATGGAGGCCTTGGTTTACTGATGGTCAAGTTTCTGGGTTTACACAAGGATATGAAAAAAATCTTACATTTTTAACCATAAAGGGAGCTGGCCACACTGTTCCAGAATATAAGCCTAAAGAGTCATTGTATGTGACGGTAGATGAAGATCATGGAAGGAACCTGTATTATTATTTTGTTGAATCAGAGGGTGAACCGAGCAAGGACCCAGTGGTTCTATGGCTTAATGGTGGACCCGGTTGTTCTAGCATGGATGGTTTTGTATATCAACATGGTAAGGTTTCAAATATCATATACTTAGACTCTCCTGGTGGAGTTGGGTTCTCTTACTCAAAGAATGAATCAGATTACATCACTGGGGATTTAAGAACAGCCAATGATACACACGCTTTTCTCCTTAAGTGGTTCGAACTGTACCCTGAGTTCCAACAGAACCCATTCTTCATAGCTGGAGAGTCATATGCTGGGATTAATATTCCCACTCTTGCTGATGCAATAGTGAGAGGAATTGATGCATGTGTGAAGCCCATACTAAATTTCAAGGGTTACTTGATAGGAAATGGTGTTACTGATAACAAATTTGATGGCAATGCTCTGATTCCATTCACACATGGGATGGGTCTTATTTCTGATGAAATATTCCAGGAGAGTGAAAGAGTTTGCAAAGGAAACTACTATGATCCTCAAAGTAAGGATTGCACATCACAGATTACAAAAGTAAACAATATTATTGCTGCGTTAAACATATATGACATTTTGGAACCATGTTATCATAACAATGGGATAGAATCATCTAATAATACTAGGTTGCCACGAAGCTTCAAGGAATTGGGTGTAACAGATAGACCTTTGCCTGTAAGGAAGAGAATGTTTGGTCGTGCATGGCCTTATAGAGCTATTGTCAATGATGGAATCGTACCAAGTTGGCCACAACTCAATGAACTCATGAAGGATGACAGTGACAATGCAGTCGGTGTTCCATGCTTTGAATTTGAATGA 2250 0.3982 MFLVLIGALRYVTVDEDHGRNLYYYFVESECEPSKDPVVLWLNGGPGCSSMDGFVYEHGPFNFEKPTIKGALPKLTLNQFSWSKVSNIIYLDSPAGTGFSYSKNESDYVTGDLRTANDTHAFLLKWFEQYPEFQQNPFFIAGESYAGIYIPTLADAIVRGIDACVTAGNDACGKPVINFKGYMIGNGVTDKIFDGNALIPFTHGMGLISDEIFQESERVCQGNYYDPQTNDCKDQLKKVNKIIAALNVYDILEPCYHNNGTSSSSSNSRLPQSFKELGVTDRPLPVRKRMFGRAWPYRAIVNDGLVPTWPQLNKLMQKDSDIALDVPCTDVEVATEWLNNDEVRKALHTVEKSVVSKWEICTDQITYYHPTGSMIKYHKKLTSRGYRALIYSGDHDMCVPYTGSQAWVSSLGYKIVDEWRPWFTDGQVSGFTQGYEKNLTFLTIKGAGHTVPEYKPKESLYVTVDEDHGRNLYYYFVESEGEPSKDPVVLWLNGGPGCSSMDGFVYQHGKVSNIIYLDSPGGVGFSYSKNESDYITGDLRTANDTHAFLLKWFELYPEFQQNPFFIAGESYAGINIPTLADAIVRGIDACVKPILNFKGYLIGNGVTDNKFDGNALIPFTHGMGLISDEIFQESERVCKGNYYDPQSKDCTSQITKVNNIIAALNIYDILEPCYHNNGIESSNNTRLPRSFKELGVTDRPLPVRKRMFGRAWPYRAIVNDGIVPSWPQLNELMKDDSDNAVGVPCFEFE 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151115g00024 749 FunFam Carboxypeptidase 327 465 - -
Stsc151115g00024 749 SUPERFAMILY alpha/beta-Hydrolases 11 461 IPR029058 -
Stsc151115g00024 749 ProSitePatterns Serine carboxypeptidases, histidine active site. 439 456 IPR033124 GO:0004185
Stsc151115g00024 749 Pfam Serine carboxypeptidase 11 460 IPR001563 GO:0004185|GO:0006508
Stsc151115g00024 749 Pfam Serine carboxypeptidase 510 678 IPR001563 GO:0004185|GO:0006508
Stsc151115g00024 749 ProSitePatterns Serine carboxypeptidases, serine active site. 566 573 IPR018202 GO:0004185
Stsc151115g00024 749 PRINTS Carboxypeptidase C serine protease (S10) family signature 91 101 IPR001563 GO:0004185|GO:0006508
Stsc151115g00024 749 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 151 IPR001563 GO:0004185|GO:0006508
Stsc151115g00024 749 PRINTS Carboxypeptidase C serine protease (S10) family signature 78 90 IPR001563 GO:0004185|GO:0006508
Stsc151115g00024 749 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185|GO:0006508
Stsc151115g00024 749 FunFam Carboxypeptidase 7 277 - -
Stsc151115g00024 749 Gene3D alpha/beta hydrolase 10 462 IPR029058 -
Stsc151115g00024 749 Gene3D alpha/beta hydrolase 463 699 IPR029058 -
Stsc151115g00024 749 ProSitePatterns Serine carboxypeptidases, serine active site. 140 147 IPR018202 GO:0004185
Stsc151115g00024 749 SUPERFAMILY alpha/beta-Hydrolases 461 735 IPR029058 -
Stsc151115g00024 749 FunFam Carboxypeptidase 374 465 - -
Stsc151115g00024 749 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 456 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151115g00024 Stsc-Chr151115 121585 131257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151115g00024 331 460 Calmodulin-binding Proteins AT2G22960 46.154 2.81e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151115g00024 K16296 - qsu:112015389 674.085